LOCUS       AFI87511.1               693 aa    PRT              BCT 27-JUN-2016
DEFINITION  Aggregatibacter actinomycetemcomitans D7S-1 ATP-dependent
            DNA helicase RecG protein.
ACCESSION   CP003496-1466
PROTEIN_ID  AFI87511.1
SOURCE      Aggregatibacter actinomycetemcomitans D7S-1
  ORGANISM  Aggregatibacter actinomycetemcomitans D7S-1
            Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2308962)
  AUTHORS   Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and
            Bumgarner,R.
  TITLE     Genome sequence of naturally competent Aggregatibacter
            actinomycetemcomitans serotype a strain D7S-1
  JOURNAL   J. Bacteriol. 192 (10), 2643-2644 (2010)
   PUBMED   20348265
REFERENCE   2  (bases 1 to 2308962)
  AUTHORS   Kittichotirat,W., Bumgarner,R.E. and Chen,C.
  TITLE     Evolutionary Divergence of Aggregatibacter actinomycetemcomitans
  JOURNAL   J. Dent. Res. 95 (1), 94-101 (2016)
   PUBMED   26420795
REFERENCE   3  (bases 1 to 2308962)
  AUTHORS   Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and
            Baumgarner,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2010) Microbiology, University of Washington, 960
            Republican St. Rosen Building, Seattle, WA 98109, USA
REFERENCE   4  (bases 1 to 2308962)
  AUTHORS   Kittichotirat,W., Bumgarner,R. and Chen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-APR-2012) Department of Microbiology, University of
            Washington, 960 Republican St. Rosen Building, Seattle, WA 98109,
            USA
REFERENCE   5  (bases 1 to 2308962)
  AUTHORS   Kittichotirat,W., Bumgarner,R. and Chen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow
            School of Dentistry, University of Southern Californak, 925 W. 34th
            Street, Los Angeles, CA 90089, USA
  REMARK    Sequence update by submitter
COMMENT     On Jun 27, 2016 this sequence version replaced CP003496.1.
            Source of DNA for this strain is available from: Casey Chen,
            Division of Primary Oral Health Care, USC School of Dentistry, 925
            W 34th Street, Los Angeles, CA 90089-0641.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 24-MAY-2014
            Assembly Method       :: 454 Newbler assembler v. 2.0.00.22
            Assembly Name         :: AaD7S-1v2.0
            Genome Coverage       :: 17.58x
            Sequencing Technology :: 454 Illumina MiSeq
            ##Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 07/17/2014 13:42:00
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.6 (rev. 440435)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 2,197
            CDS                          :: 2,041
            Pseudo Genes                 :: 83
            CRISPR Arrays                :: 3
            rRNAs                        :: 19 (5S, 16S, 23S)
            tRNAs                        :: 53
            ncRNA                        :: 1
            Frameshifted Genes           :: 69
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Aggregatibacter actinomycetemcomitans D7S-1"
                     /mol_type="genomic DNA"
                     /strain="D7S-1"
                     /db_xref="taxon:694569"
     protein         /locus_tag="D7S_01778"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_005548351.1"
                     /note="catalyzes branch migration in Holliday junction
                     intermediates; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSTQLLDAIP LTVISGVGAA VVEKLGKLGI FNLQDLLFHL PLRYEDRTRI TPIADLQAEQ
       61 YATIEGVVQS SEVQFGRRPM LMVYLSDGTA KLALRFFNFN AGMKNSLQPG ARVKAFGEVR
      121 RGRFMAEIHH PEYQIIHDNK PLVLAETLTP IYPSTEGLKQ TTLRKLIGQA LLVLDKTPIA
      181 ELLPAECNPH PFDLKSAIQF LHNPPPDVSL TTLEEGKHPA QQRLIFEELL AYNLAMQKVR
      241 SGIQANFAEP LSYQSDLKAR FLAQLPFQPT NAQLRVTEDI ERDMAQSYPM MRLVQGDVGS
      301 GKTLVAALAA LIAIDNGKQV ALMAPTEILA EQHAVNFRRW FEPIGIQVGW LAGKVKGKQR
      361 VAELEKIKSG AVQMVVGTHA LFQEDVEFHR LSLVIVDEQH RFGVHQRLML REKGNQAGVY
      421 PHQLIMTATP IPRTLAMTVY ADLDTSIIDE LPPGRTPITT IAISEDRRAE IIERVNVACT
      481 QEKRQAYWVC TLIDESEVLE AQAAEAVAED LRKILPHLRI GLVHGRMKPN EKQAVMAQFK
      541 LVELDLLVAT TVIEVGVDVP NASLMIIENA ERLGLSQLHQ LRGRVGRGST ASFCVLMYKP
      601 PLGKISQKRL QVMRDTQDGF VISEKDLEIR GPGEVLGTKQ TGITEFKVAN LMRDRKMLPT
      661 VQFYAKQLVQ KYPQTADLLI RRWLNNREIY SNA
//