LOCUS AFI86881.1 855 aa PRT BCT 27-JUN-2016 DEFINITION Aggregatibacter actinomycetemcomitans D7S-1 penicillin- binding protein protein. ACCESSION CP003496-895 PROTEIN_ID AFI86881.1 SOURCE Aggregatibacter actinomycetemcomitans D7S-1 ORGANISM Aggregatibacter actinomycetemcomitans D7S-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter. REFERENCE 1 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and Bumgarner,R. TITLE Genome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1 JOURNAL J. Bacteriol. 192 (10), 2643-2644 (2010) PUBMED 20348265 REFERENCE 2 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R.E. and Chen,C. TITLE Evolutionary Divergence of Aggregatibacter actinomycetemcomitans JOURNAL J. Dent. Res. 95 (1), 94-101 (2016) PUBMED 26420795 REFERENCE 3 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and Baumgarner,R. TITLE Direct Submission JOURNAL Submitted (01-MAR-2010) Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 4 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (23-APR-2012) Department of Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 5 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow School of Dentistry, University of Southern Californak, 925 W. 34th Street, Los Angeles, CA 90089, USA REMARK Sequence update by submitter COMMENT On Jun 27, 2016 this sequence version replaced CP003496.1. Source of DNA for this strain is available from: Casey Chen, Division of Primary Oral Health Care, USC School of Dentistry, 925 W 34th Street, Los Angeles, CA 90089-0641. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 24-MAY-2014 Assembly Method :: 454 Newbler assembler v. 2.0.00.22 Assembly Name :: AaD7S-1v2.0 Genome Coverage :: 17.58x Sequencing Technology :: 454 Illumina MiSeq ##Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/17/2014 13:42:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.6 (rev. 440435) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,197 CDS :: 2,041 Pseudo Genes :: 83 CRISPR Arrays :: 3 rRNAs :: 19 (5S, 16S, 23S) tRNAs :: 53 ncRNA :: 1 Frameshifted Genes :: 69 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Aggregatibacter actinomycetemcomitans D7S-1" /mol_type="genomic DNA" /strain="D7S-1" /db_xref="taxon:694569" protein /locus_tag="D7S_01096" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_005555443.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRIAKLILSS LLTLFILGGI VAGMFYIQLK SDLPDVETLK TVELQQPMQI YTSDGKLIGE 61 VGEQRRIPVK LADIPEKLIQ AVLATEDSRF YEHHGLDPIG IGRALMVAVT KGGASQGAST 121 ITQQLARNFF LTPEKSLIRK AKEAILAIDI ENALDKNEIL ELYLNKIYLG YRSYGVAAAA 181 KTYFGKELNQ LTLSEMAVIA GLPKAPSTMN PLFSPKRALE RRNVVLGRML DQKYISKEEY 241 DAALKAPIVA SYHGAQMDFR ADYVTEMVRQ EMVKRFGEEN AYTKGYKVYT TVLSKDQETA 301 QKAVRDNLIA YDMRHGYRGG APLWKKDEAP WDNDTIIGFL KKLPSSEPFI PAAAVSVAKS 361 GAELLLASGD KITLPSSAMR WTGQANPVKV GDQIWIRKND KGGWMLGQIP QANSALVSLN 421 SDNGAIEAIV GGFSFEQSKF NRATQSLVQV GSSIKPFIYA AALEKGLTLS SVLQDMPIVL 481 KKPGQKEWRP RNSPDRYDGP LRLRVGLGQS KNMIAIRSMQ MAGIDFVADF LQRFGFKRDQ 541 YFASEALALG AASFTPLEMA RGYAVFDNGG YLVDPYIIDK ILDNSGKEIF VANPKVACPT 601 CDNIPVIYGE TEKLDGFKNT DLTPADEFAR TDESTNGEEV DQGESVPDIP ELQPRVDVVK 661 EENLNLMADA KTNGSEVQYA PRVISGELAF LIRSALSTAI YGEQGLGWKG TSWRMANDIK 721 RKDIGGKTGT TNNSKVAWYA GFGANLTTAV YIGFDDNRFN LGRGEAGAKS AMPAWIAYMK 781 PILQDIPERA LPMPANIVEK HIDLRSGLLA NDGRVEYFIK GTEPTRAYVE ERGYYVPSEL 841 LDGDSSPGGQ PEELF //