LOCUS AFI86176.2 886 aa PRT BCT 27-JUN-2016 DEFINITION Aggregatibacter actinomycetemcomitans D7S-1 pyruvate dehydrogenase protein. ACCESSION CP003496-257 PROTEIN_ID AFI86176.2 SOURCE Aggregatibacter actinomycetemcomitans D7S-1 ORGANISM Aggregatibacter actinomycetemcomitans D7S-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter. REFERENCE 1 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and Bumgarner,R. TITLE Genome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1 JOURNAL J. Bacteriol. 192 (10), 2643-2644 (2010) PUBMED 20348265 REFERENCE 2 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R.E. and Chen,C. TITLE Evolutionary Divergence of Aggregatibacter actinomycetemcomitans JOURNAL J. Dent. Res. 95 (1), 94-101 (2016) PUBMED 26420795 REFERENCE 3 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and Baumgarner,R. TITLE Direct Submission JOURNAL Submitted (01-MAR-2010) Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 4 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (23-APR-2012) Department of Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 5 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow School of Dentistry, University of Southern Californak, 925 W. 34th Street, Los Angeles, CA 90089, USA REMARK Sequence update by submitter COMMENT On Jun 27, 2016 this sequence version replaced CP003496.1. Source of DNA for this strain is available from: Casey Chen, Division of Primary Oral Health Care, USC School of Dentistry, 925 W 34th Street, Los Angeles, CA 90089-0641. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 24-MAY-2014 Assembly Method :: 454 Newbler assembler v. 2.0.00.22 Assembly Name :: AaD7S-1v2.0 Genome Coverage :: 17.58x Sequencing Technology :: 454 Illumina MiSeq ##Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/17/2014 13:42:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.6 (rev. 440435) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,197 CDS :: 2,041 Pseudo Genes :: 83 CRISPR Arrays :: 3 rRNAs :: 19 (5S, 16S, 23S) tRNAs :: 53 ncRNA :: 1 Frameshifted Genes :: 69 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Aggregatibacter actinomycetemcomitans D7S-1" /mol_type="genomic DNA" /strain="D7S-1" /db_xref="taxon:694569" protein /gene="aceE" /locus_tag="D7S_00314" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_019518255.1" /note="E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSELLKNDVD PIETNDWLAA IDSLIREEGV ERAQFIIDQV MQQARIGGVS LPTGITTDYV 61 NTIPVSEQPE YPGNLDIERR IRSYVRWNAV MMVLRGQKKD LDLGGHLSTF QSAATVYEVC 121 FNHFFKATTE KNGGDLVFFQ GHAAPGMYAR AFLEGRLTED QLDNFRQEVH GKGLSSYPHP 181 KLMPDFWQFS TVSMGLGPVN AIYQARFLKY LENRGLKDTA DQKVYAFLGD GEMDEIESKG 241 ALTFAAREHL DNLIFVISCN LQRLDGPVNG NGKIVQELEG LFVGAGWEVI KVMWGSGWDK 301 LFAKDTTGKL TQLMMEVVDG DYLTFKSKKI GAYVREHFFG RYPETAALVA DMTDDEIWAL 361 RRGGHDSKKV FAAFKKAQTA GKPVVILVHS VKGYKISEAE SKNTAHQSKK MSMDSLKAYR 421 DYFHIPVKDE DLEKLPYMTF PEGSDEYNYL HQHRKALQGY LPARQPKFDV EFKVPELSEF 481 APLLGAQPRP ISTTMAFVRF LNTLLKDKNI GKNIVPIVAD EARTFGMEGL FRQVGIYNPH 541 GQNYVPSDRD LVAYYREAKD GQVLQEGINE LGATSSWLAA ATSYSISNVP MIPFFIYYSM 601 FGFQRVGDLL WAAGDQLARG FMIGGTSGRT TLNGEGLQHE DGHSHIQSLI IPNCVSYDPA 661 FAYEVAVIMQ DGIHRMYGEK QEDVFYYITT LNEIYDQPAM PAGAEEGIRK GLYKFESVEG 721 KGKGAVQLLG SGAILRHVRE AAQILAKDYG VSSDVYSAPS FTEAAREGAD AVRWNMLHPT 781 ETPRVPYVAQ VMNDKPVVAA TDYMKLFAEQ IRAYVPSKHY HVLGTDGFGR SDSRENLRDH 841 FEVDAHHVVV AALNVLAQEG SVDKKVVVEA IAKYGIDPER LNPLYA //