LOCUS       AFI86033.1              1107 aa    PRT              BCT 27-JUN-2016
DEFINITION  Aggregatibacter actinomycetemcomitans D7S-1 hypothetical
            protein protein.
ACCESSION   CP003496-141
PROTEIN_ID  AFI86033.1
SOURCE      Aggregatibacter actinomycetemcomitans D7S-1
  ORGANISM  Aggregatibacter actinomycetemcomitans D7S-1
            Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2308962)
  AUTHORS   Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and
            Bumgarner,R.
  TITLE     Genome sequence of naturally competent Aggregatibacter
            actinomycetemcomitans serotype a strain D7S-1
  JOURNAL   J. Bacteriol. 192 (10), 2643-2644 (2010)
   PUBMED   20348265
REFERENCE   2  (bases 1 to 2308962)
  AUTHORS   Kittichotirat,W., Bumgarner,R.E. and Chen,C.
  TITLE     Evolutionary Divergence of Aggregatibacter actinomycetemcomitans
  JOURNAL   J. Dent. Res. 95 (1), 94-101 (2016)
   PUBMED   26420795
REFERENCE   3  (bases 1 to 2308962)
  AUTHORS   Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and
            Baumgarner,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2010) Microbiology, University of Washington, 960
            Republican St. Rosen Building, Seattle, WA 98109, USA
REFERENCE   4  (bases 1 to 2308962)
  AUTHORS   Kittichotirat,W., Bumgarner,R. and Chen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-APR-2012) Department of Microbiology, University of
            Washington, 960 Republican St. Rosen Building, Seattle, WA 98109,
            USA
REFERENCE   5  (bases 1 to 2308962)
  AUTHORS   Kittichotirat,W., Bumgarner,R. and Chen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow
            School of Dentistry, University of Southern Californak, 925 W. 34th
            Street, Los Angeles, CA 90089, USA
  REMARK    Sequence update by submitter
COMMENT     On Jun 27, 2016 this sequence version replaced CP003496.1.
            Source of DNA for this strain is available from: Casey Chen,
            Division of Primary Oral Health Care, USC School of Dentistry, 925
            W 34th Street, Los Angeles, CA 90089-0641.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 24-MAY-2014
            Assembly Method       :: 454 Newbler assembler v. 2.0.00.22
            Assembly Name         :: AaD7S-1v2.0
            Genome Coverage       :: 17.58x
            Sequencing Technology :: 454 Illumina MiSeq
            ##Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 07/17/2014 13:42:00
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.6 (rev. 440435)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 2,197
            CDS                          :: 2,041
            Pseudo Genes                 :: 83
            CRISPR Arrays                :: 3
            rRNAs                        :: 19 (5S, 16S, 23S)
            tRNAs                        :: 53
            ncRNA                        :: 1
            Frameshifted Genes           :: 69
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Aggregatibacter actinomycetemcomitans D7S-1"
                     /mol_type="genomic DNA"
                     /strain="D7S-1"
                     /db_xref="taxon:694569"
     protein         /locus_tag="D7S_00159"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_005594932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKINAFLTAL CVALLLNVAV SQSAFADQNN ALPTEKSLKA DLANAQKLPD GDEKKTLVAD
       61 LQTSLDLLQQ IQAQQKANDE LQATINGADA EIQKDSTDLQ NLKKQLNTAS ADDYKSATLT
      121 SLQSAFEKLN AQQQDTQAAL NVANGLLAGQ SSVSERAQTA LATNLKRTQE LNQKLAESST
      181 SSTLKQQYQL ELQLIELRNA NNQFLLKNSD QLTVLYKNRY DLLSVRVQVQ QQQLALIQEV
      241 INQKNLVQSQ NQVEQAQQQQ QSAVKNNFIQ QELERNAQLS RFLLEQTEKT NTLTQDELRM
      301 RNVLENLTQT QRTIDEQISA LQGTLVLSRI IQQQKQKLPT NLNIQGLSKQ IADLRVQIFD
      361 ITQRRNELYD LDAYITKVQS DENQTFTDTE ETQLTNLLTE RRKIASDVIK SLNNQLNLAI
      421 SLELTQQQIT QISDRIQAKL DQQSFWVKSN NPLNLDWIKT LPMSLSAQFD GIVKKLGFPS
      481 NFDNLPYLLT YVFILVVIGG IIFKFKPAIK HRFALMNGEI NTLRSDSQWH TPIALFYTAI
      541 LSLSGTLWFL AICQLVGFFF FRNPAEFWQW SLSMAGYWWF FSFLLAVLRP NGILVRHFGF
      601 SQETAEKFQS ITKRIIVAVV LLLNTSIFSN VMDSGLANDI FGEINTIIAL GFCILIIAPR
      661 FNRTVTAFGA NTQDNRDKII LKIVRILLRL APVGLIVLVV LGYYYTALNL ISHIINTYIA
      721 WVVWSLARHT VYRAITVASR RLAYRRLQEK RQQKQADSND GSPSDDVVMI TEQEEGLALN
      781 QVRSQLLSFA DLFIWTALFA MFYYVWSDLV TVASYLRDIT LWQQISTTEA GVITESISLF
      841 NLLVALVIIS ITYILVRNIP GILEVIIFSR VRLSQGTPYT INTLLTYILV AIGGAWAFAT
      901 LGMSWSKLQW LFAALSVGLG FGMQEIFANF VSGIILLFER PIRVGDTVTI NDVSGTVAKI
      961 RIRAITLIDF DRKEVIVPNK SFVTGQVINW ALSNTMTRLV IRVGVAYGSN LELVKKLLLQ
     1021 AANEQPAVLK DPEPRALFLS FGASTLDHEL RVYVGQLSER TNTIDSLNRR INELFTENNI
     1081 DIAFNQLDVF IKNQDTSAVM PLIEVKS
//