LOCUS AFI86033.1 1107 aa PRT BCT 27-JUN-2016 DEFINITION Aggregatibacter actinomycetemcomitans D7S-1 hypothetical protein protein. ACCESSION CP003496-141 PROTEIN_ID AFI86033.1 SOURCE Aggregatibacter actinomycetemcomitans D7S-1 ORGANISM Aggregatibacter actinomycetemcomitans D7S-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter. REFERENCE 1 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and Bumgarner,R. TITLE Genome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1 JOURNAL J. Bacteriol. 192 (10), 2643-2644 (2010) PUBMED 20348265 REFERENCE 2 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R.E. and Chen,C. TITLE Evolutionary Divergence of Aggregatibacter actinomycetemcomitans JOURNAL J. Dent. Res. 95 (1), 94-101 (2016) PUBMED 26420795 REFERENCE 3 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and Baumgarner,R. TITLE Direct Submission JOURNAL Submitted (01-MAR-2010) Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 4 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (23-APR-2012) Department of Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 5 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow School of Dentistry, University of Southern Californak, 925 W. 34th Street, Los Angeles, CA 90089, USA REMARK Sequence update by submitter COMMENT On Jun 27, 2016 this sequence version replaced CP003496.1. Source of DNA for this strain is available from: Casey Chen, Division of Primary Oral Health Care, USC School of Dentistry, 925 W 34th Street, Los Angeles, CA 90089-0641. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 24-MAY-2014 Assembly Method :: 454 Newbler assembler v. 2.0.00.22 Assembly Name :: AaD7S-1v2.0 Genome Coverage :: 17.58x Sequencing Technology :: 454 Illumina MiSeq ##Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/17/2014 13:42:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.6 (rev. 440435) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,197 CDS :: 2,041 Pseudo Genes :: 83 CRISPR Arrays :: 3 rRNAs :: 19 (5S, 16S, 23S) tRNAs :: 53 ncRNA :: 1 Frameshifted Genes :: 69 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Aggregatibacter actinomycetemcomitans D7S-1" /mol_type="genomic DNA" /strain="D7S-1" /db_xref="taxon:694569" protein /locus_tag="D7S_00159" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_005594932.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKINAFLTAL CVALLLNVAV SQSAFADQNN ALPTEKSLKA DLANAQKLPD GDEKKTLVAD 61 LQTSLDLLQQ IQAQQKANDE LQATINGADA EIQKDSTDLQ NLKKQLNTAS ADDYKSATLT 121 SLQSAFEKLN AQQQDTQAAL NVANGLLAGQ SSVSERAQTA LATNLKRTQE LNQKLAESST 181 SSTLKQQYQL ELQLIELRNA NNQFLLKNSD QLTVLYKNRY DLLSVRVQVQ QQQLALIQEV 241 INQKNLVQSQ NQVEQAQQQQ QSAVKNNFIQ QELERNAQLS RFLLEQTEKT NTLTQDELRM 301 RNVLENLTQT QRTIDEQISA LQGTLVLSRI IQQQKQKLPT NLNIQGLSKQ IADLRVQIFD 361 ITQRRNELYD LDAYITKVQS DENQTFTDTE ETQLTNLLTE RRKIASDVIK SLNNQLNLAI 421 SLELTQQQIT QISDRIQAKL DQQSFWVKSN NPLNLDWIKT LPMSLSAQFD GIVKKLGFPS 481 NFDNLPYLLT YVFILVVIGG IIFKFKPAIK HRFALMNGEI NTLRSDSQWH TPIALFYTAI 541 LSLSGTLWFL AICQLVGFFF FRNPAEFWQW SLSMAGYWWF FSFLLAVLRP NGILVRHFGF 601 SQETAEKFQS ITKRIIVAVV LLLNTSIFSN VMDSGLANDI FGEINTIIAL GFCILIIAPR 661 FNRTVTAFGA NTQDNRDKII LKIVRILLRL APVGLIVLVV LGYYYTALNL ISHIINTYIA 721 WVVWSLARHT VYRAITVASR RLAYRRLQEK RQQKQADSND GSPSDDVVMI TEQEEGLALN 781 QVRSQLLSFA DLFIWTALFA MFYYVWSDLV TVASYLRDIT LWQQISTTEA GVITESISLF 841 NLLVALVIIS ITYILVRNIP GILEVIIFSR VRLSQGTPYT INTLLTYILV AIGGAWAFAT 901 LGMSWSKLQW LFAALSVGLG FGMQEIFANF VSGIILLFER PIRVGDTVTI NDVSGTVAKI 961 RIRAITLIDF DRKEVIVPNK SFVTGQVINW ALSNTMTRLV IRVGVAYGSN LELVKKLLLQ 1021 AANEQPAVLK DPEPRALFLS FGASTLDHEL RVYVGQLSER TNTIDSLNRR INELFTENNI 1081 DIAFNQLDVF IKNQDTSAVM PLIEVKS //