LOCUS AET73111.1 2010 aa PRT HTG 25-JUL-2016
DEFINITION Phaeocystis globosa virus 12T hypothetical protein protein.
ACCESSION HQ634147-264
PROTEIN_ID AET73111.1
SOURCE Phaeocystis globosa virus 12T
ORGANISM Phaeocystis globosa virus 12T
Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota;
Megaviricetes; Algavirales; Phycodnaviridae; Prymnesiovirus.
REFERENCE 1 (bases 1 to 460002)
AUTHORS Henn,M.R., Brussaard,C., Wommack,E., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE The Genome Sequence of Phaeocystis globosa virus 12T
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 460002)
AUTHORS Henn,M.R., Brussaard,C., Wommack,E., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2010) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT This genome was sequenced by the Broad Institute and co-owned with
CAMERA.
##Metadata-START##
Isolation method :: double dilution series
Template preparation method :: 1) Viral lysate filtered (2)
concentrated virus particles
embedded into PFGE agarose
plug. (3) Viral genomic DNA
PFGE-band B-agarase treated (4)
DNA was ppt and resuspended in
TE.
500ul from PFGE; 100ul covaris
sheared MDA DNA;
40ul of MDA DNA
Phage/virus type :: DNA:ds Viral DNA
Phage/virus "hybrid" information :: not applicable
Phage/virus taxonomy :: Phycodnaviridae
Phage/virus strain :: 12
Morphology :: hexagonal, icosahedral symmetry
Latitude :: 52.98N
Longitude :: 4.74E
Depth (m) :: 2.00
Collection date :: 05-Jul-2000
Sample collection site :: Atlantic Ocean: Southern North
Sea
Other collection site info :: not applicable
Filter fraction (um) :: not applicable
Volume filtered (L) :: not applicable
Habitat description :: coastal water
Other metadata available :: not applicable
References :: not applicable
Lab Host :: Phaeocystis globosa Pg-PI
##Metadata-END##
* NOTE: This is a 'working draft' sequence. It currently
* consists of 3 contigs. The true order of the pieces
* is not known and their order in this sequence record is
* arbitrary. Gaps between the contigs are represented as
* runs of N, but the exact sizes of the gaps are unknown.
* This record will be updated with the finished sequence
* as soon as it is available and the accession number will
* be preserved.
* 1 6996: contig of 6996 bp in length
* 6997 7096: gap of unknown length
* 7097 39566: contig of 32470 bp in length
* 39567 39666: gap of unknown length
* 39667 460002: contig of 420336 bp in length.
FEATURES Qualifiers
source /organism="Phaeocystis globosa virus 12T"
/mol_type="genomic DNA"
/strain="12T"
/db_xref="taxon:755273"
/lab_host="Phaeocystis globosa Pg-PI"
/country="Atlantic Ocean: Southern North Sea"
/lat_lon="52.98 N 4.74 E"
/collection_date="05-Jul-2000"
protein /locus_tag="PGAG_00222"
BEGIN
1 MSNIFKLYIN DKNNLSNLYL FIKSKYLSGI LEETVETLQN KYHDSKEFIK SDVFNTVFKD
61 DFSELDIKYI NDFDINIYFV DENIYYDDTL EIIKFKFLKY HNLQTSPPKQ ISYEELYMYG
121 LINKKYNAAE IYNTLSDNNS NKITNENLKQ YLLNVNEQIE IFNKLLEVND NKEKDIYTFD
181 DINSVQLEEV NILTPIGQNI NNKLPHLYTT NPFHLFKYSS YIRSIVNTSL NTNNSSLLFE
241 YNLVNNTLFI CFFDDVLNYT KKQTTNLDED ITIKLYYPMI ASNQLTQEQF LKNKKTYLTK
301 TTKHIASDLF TSKNTFTDTL YSVANNNQDY PDLNYNVNGV KGITLNIHTN INLSLSLESL
361 FKLINSSVEI PLIKYNPGKK NENIYRLYTN KKTKTNVKIP YLSKDLIVRY SKLIGKNNTI
421 SLVILSNDTF ISENVKLFLI ELDIYGTLNI KLEYFNHLTI EDTEEIIRKN VNPILDIIKK
481 NINTDANNIG YFNSLIDNNI EVVNLNYAMN IATDKSIKLL NSIKNCLYLY FNIIHDKANE
541 KLWRYKRVSN YNEMNDKDSF IIELIKQKEA PAKIIQMLKD NFKLSSFDEA TEIFKNAIQE
601 LSLVQNAFNY KKLKIKDSPG FVLNIDNNLS DQISITIQNI DNIRYVYFMK LYIDSIFKIS
661 FNESKNVDLT MCKAGKKKDQ QFVDDITPDD AAVELNQKNI GDVLGEEKAP ESDDVIDIDD
721 SDDDDDEDDL MNILLNDSDD DDDDEDEDED EDDDNDATKD NDDNDDDNAI LKNDTDESDD
781 EDEDNEEDED VVMETPADDK IPLKKNINLG DDDNKKKFKE ATRANPILGK LERLQPDIFK
841 TGLIKKPNIT KENIGGEFEA YSRLCQSGNQ PVILTEDEKT NIVANNPNLP PTDILEYSPD
901 PTKKNFYICP RFWDLEKSQT LTQEEVDSGK HGIIYKKGNG GNIYQFENRD REPGFLKSKA
961 VHANGKEFCL PCCFKKLKNE NTAAKNKRQI CNAKQEDAKI TDIKYVIRAD KFPLEQYKTG
1021 HLPLNIKKFL QFDSDKCINQ DNNNLKYKYT CLLRYGVQNN KFNSFIACIA DLYSRENNKK
1081 VTITIDEMKT ILVSALTIDN FIHYNNGNLL QIFTDKKYSA EFLDSIDIKD YDYKSKFYDK
1141 IDKENINQVN LYKRILTSFE QFKLYLRGND YIIDYTYLWD IICKPNTKLF PNGINLIILD
1201 ITTYDLTDNV KVICPKQNYS NEFIDDSKKS LILLKKNEYF EPVYSVKSEM SDTITPLFSF
1261 AFNAEETGLN EFKKVLNFIK NELNDNCISN ISSETNKFKK NISLDNIINI LNKLKYEVNY
1321 QVVDYESKVI AVLVSNEKFE NYRYIPCFPS KMYEYETIDT IFIDELSDEY FAEYNDTKDF
1381 LEKIYVDSNE IIQCKPQNKV VEDELVVGIL TNANQFVMLS KPALYINDEL EILSDKNYIF
1441 TDTIIQNKFD IDNDRREMIN NIKLESGFYN SFRNTVLKLL SEYKNMKFNI RLQDIIKNNA
1501 VIYFDKIKLI REELESLVDN YVMFAQYDPK ILNGIKNFSS CINNTNCDSD YCMVKPETNI
1561 CNLIIPDTNL ITSDSNVDIY FTKLADEFAR YNKTKLVLFN PSKFISFNNI KYNINNDEVI
1621 IMESALAKEI TTSNYNIKDP YSNLNTFDTQ NIKNNKQVNK VNTENIKVEY TEFDMDQLKP
1681 NQKVILKLPQ EQIDKIKAIG KKYEEEKAKA KAKANAANVD APTEPDVQED NDDVDGQNIS
1741 DYAKNMECKH KKLAVKEKLN KFFVPKIYEF FFNIVDENTQ ETLGLCSTEL ILYIIKHHHV
1801 NIGDNSLKDM TGTDIKNILI DEYFYHDNTE ALLVMAQAYN KNSMTTNMTQ YAKKMEDSIF
1861 VKTDEFKNLL VRVINDDAYV FNYVDIYLLA MKYKLPIILV SNSVINAKIN LEPYVILNKN
1921 ENNDNYYFIK LPSSTHRGLK NYKLLISSQN NISTLNVTEQ IQDADDKFPI YTSITERLKS
1981 HTDLFIGAVN KYHNEKVEPK NRKLLQKLNK
//