LOCUS AET73088.1 1373 aa PRT HTG 25-JUL-2016
DEFINITION Phaeocystis globosa virus 12T hypothetical protein protein.
ACCESSION HQ634147-241
PROTEIN_ID AET73088.1
SOURCE Phaeocystis globosa virus 12T
ORGANISM Phaeocystis globosa virus 12T
Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota;
Megaviricetes; Algavirales; Phycodnaviridae; Prymnesiovirus.
REFERENCE 1 (bases 1 to 460002)
AUTHORS Henn,M.R., Brussaard,C., Wommack,E., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE The Genome Sequence of Phaeocystis globosa virus 12T
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 460002)
AUTHORS Henn,M.R., Brussaard,C., Wommack,E., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2010) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT This genome was sequenced by the Broad Institute and co-owned with
CAMERA.
##Metadata-START##
Isolation method :: double dilution series
Template preparation method :: 1) Viral lysate filtered (2)
concentrated virus particles
embedded into PFGE agarose
plug. (3) Viral genomic DNA
PFGE-band B-agarase treated (4)
DNA was ppt and resuspended in
TE.
500ul from PFGE; 100ul covaris
sheared MDA DNA;
40ul of MDA DNA
Phage/virus type :: DNA:ds Viral DNA
Phage/virus "hybrid" information :: not applicable
Phage/virus taxonomy :: Phycodnaviridae
Phage/virus strain :: 12
Morphology :: hexagonal, icosahedral symmetry
Latitude :: 52.98N
Longitude :: 4.74E
Depth (m) :: 2.00
Collection date :: 05-Jul-2000
Sample collection site :: Atlantic Ocean: Southern North
Sea
Other collection site info :: not applicable
Filter fraction (um) :: not applicable
Volume filtered (L) :: not applicable
Habitat description :: coastal water
Other metadata available :: not applicable
References :: not applicable
Lab Host :: Phaeocystis globosa Pg-PI
##Metadata-END##
* NOTE: This is a 'working draft' sequence. It currently
* consists of 3 contigs. The true order of the pieces
* is not known and their order in this sequence record is
* arbitrary. Gaps between the contigs are represented as
* runs of N, but the exact sizes of the gaps are unknown.
* This record will be updated with the finished sequence
* as soon as it is available and the accession number will
* be preserved.
* 1 6996: contig of 6996 bp in length
* 6997 7096: gap of unknown length
* 7097 39566: contig of 32470 bp in length
* 39567 39666: gap of unknown length
* 39667 460002: contig of 420336 bp in length.
FEATURES Qualifiers
source /organism="Phaeocystis globosa virus 12T"
/mol_type="genomic DNA"
/strain="12T"
/db_xref="taxon:755273"
/lab_host="Phaeocystis globosa Pg-PI"
/country="Atlantic Ocean: Southern North Sea"
/lat_lon="52.98 N 4.74 E"
/collection_date="05-Jul-2000"
protein /locus_tag="PGAG_00199"
BEGIN
1 MKTTRKNKTV AINKTRSIQL YKHINDIHKL NLVGGTKAPT EDEELVIDDD PIEEPTDEEP
61 SDDEESDEEE ESEEEESEEE ESEEEESDED EDEVEIEDDK VEPDEDAVKG KRNPVLHNLF
121 KTNINNFNFD KSILEENKND LHSKKDAQYF LNAVEILNSK LIDDTANKDI DADDKKYKMD
181 YLYPHLDDKY LNLKISQKKE FNEYKQNVNI NKDIGEEGEK LCNQNFELAP HQNFVKNFLS
241 ENTPYNGMLL YHGLGTGKTC SAIGIAEETR RYMKYNGSNK EILIVASPNV QINFRLQLFD
301 ETKLKYVNER WTINNCAGQN ILDEINALQS KISREKVVRL VENIINSYYI FVGYIELANL
361 INKHSNINNI VKDNPKITKK KQNQLIKNKL DKFFSNRLVI IDEIHNVRDS KETSNKLVAK
421 QIDNLVRNVS NMKLVLLSAT PMFNDYKEII FLINLLNSND NRSVIDVKDV FNNDGEFIVD
481 EDGNEVGKEL LQRKLNGYVS YIKGDNPFIF PYRILPQVFD NNNSIKHPDF NYPVNNVLGN
541 RFEEPTKISY FDIYVSKLSE YQEKVYNYIV NKTDFKEGSD SYKYTLLLKP LEALNMVYPM
601 KELETAPIES VKSLKLDVKK LVGKSALSNI MSYEEDAKQG YRFNYKFNDP TMENVFLREN
661 LVKYSSKISN IIDSIENSTG PIIIYSQFID GGLIPVALAL EAYGFKRYGG GARSLFGTPP
721 VEELDVMSYK PKSQALKENN KFRGAKYIMI TGDKILSPNK EVELKSCNDS NNVYGENIKV
781 ILISSAGSEG LDFKYIRQIH ILEPWYNINR IEQIIGRGVR TCSHKDLPLA ERNVQIFMYA
841 SLLSNLTIET IDLLIYRKAE EKAKLIGNVT RILKEISVDC HLNYDLNLFS ENKMSELVNN
901 ELDLTLSNNK TVKYKVGDKP FTALCDYMES CEYYCNPSKE DYTMKEGEED NLKTYNDSYL
961 QTTNSKIIKI IQELFKENYF YRKEELIGVI NMRDDFSLLA INNALDELIN NELQSITDKY
1021 NRQGRLINID NLYIYQPLEL DNEKTSIYNR STPVNSMIDS ITYDVDEPVI NDDVDIKING
1081 PTKTDETVKA NIVSGEKVVE GLVHHQTNIM SGNKQYVTKL ENSKYNYLAY VINFNNDVRW
1141 KNILKFDLEL LPKIILHILI DNLDRESYLN LISYIYNTSG DDKPLFLEIK EYLEQSIVEA
1201 KHNKSTLRCV VIPSKGDIND IYTIYMLKEN TEGKISLIKG QQTDYTRLGP NIISKYTLPE
1261 PKYRPDAYAF IDVPKKESEF YQFKIIYLKE DKFTKGKICT FFKTILDRYE SFMIHFLTKK
1321 EYDKLTGEYK LGKYICTIAE MYFRQFDLNK EKGFTNWFLS TNQAVINKIT PPS
//