LOCUS AEH23534.1 402 aa PRT BCT 17-JUL-2013
DEFINITION Thermodesulfobacterium geofontis OPF15 Tyrosyl-tRNA synthetase
protein.
ACCESSION CP002829-1417
PROTEIN_ID AEH23534.1
SOURCE Thermodesulfobacterium geofontis OPF15
ORGANISM Thermodesulfobacterium geofontis OPF15
Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales;
Thermodesulfobacteriaceae; Thermodesulfobacterium.
REFERENCE 1 (bases 1 to 1634377)
AUTHORS Elkins,J.G., Hamilton-Brehm,S.D., Lucas,S., Han,J., Lapidus,A.,
Cheng,J.F., Goodwin,L.A., Pitluck,S., Peters,L., Mikhailova,N.,
Davenport,K.W., Detter,J.C., Han,C.S., Tapia,R., Land,M.L.,
Hauser,L., Kyrpides,N.C., Ivanova,N.N., Pagani,I., Bruce,D.,
Woyke,T. and Cottingham,R.W.
TITLE Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing
Bacterium Thermodesulfobacterium geofontis OPF15T
JOURNAL Genome Announc 1 (2), E00162-13 (2013)
PUBMED 23580711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1634377)
AUTHORS Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S.,
Peters,L., Mikhailova,N., Davenport,K., Detter,J.C., Han,C.,
Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I.,
Hamilton-Brehm,S., Elkins,J. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4091115
Source DNA and organism available from James G. Elkins
(elkinsjg@ornl.gov)
Contacts: James G. Elkins (elkinsjg@ornl.gov)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Thermodesulfobacterium geofontis OPF15(T)
collection_date :: 21-Jul-2001
lat_lon :: 44.469 -110.639
depth :: Missing
alt_elev :: approx. 2280 m.
country :: USA
environment :: Fresh water hotspring
num_replicons :: 1
ref_biomaterial :: doi:10.1007/s00792-013-0512-1
biotic_relationship :: Free living
trophic_level :: Chemoautotroph
rel_to_oxygen :: Anaerobe
isol_growth_condt :: doi:10.1007/s00792-013-0512-1
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi09586
Funding Program :: DOE-BESC2010
Isolation Site :: Obsidian Pool, Yellowstone National Park,
Wyoming, USA
Isolation Comments :: isolated by James G. Elkins
Cell Shape :: Rod-shaped
Temperature Range :: 60-90C
Temperature Optimum :: 83C
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Thermodesulfobacterium geofontis OPF15"
/mol_type="genomic DNA"
/strain="OPF15"
/isolation_source="Obsidian Pool, Yellowstone National
Park"
/type_material="type strain of Thermodesulfobacterium
geofontis"
/db_xref="taxon:795359"
/country="USA: Wyoming"
/lat_lon="44.469 N 110.639 W"
/altitude="2280 m"
/collection_date="21-Jul-2001"
/collected_by="James G. Elkins"
protein /locus_tag="TOPB45_1455"
/EC_number="6.1.1.1"
/inference="protein motif:HAMAP:MF_02007"
/note="PFAM: Aminoacyl-tRNA synthetase, class Ib;
RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class
Ib, bacterial/mitochondrial; HAMAP: Tyrosyl-tRNA
synthetase; KEGG: ddf:DEFDS_0113 tyrosyl-tRNA synthetase"
/transl_table=11
/db_xref="InterPro:IPR002305"
/db_xref="InterPro:IPR002307"
/db_xref="InterPro:IPR002942"
BEGIN
1 MKEEIKKALE IIKKGVVNLI SEEELIRKLE KSYKEKKPLK IKAGFDPTAP DLHLGHTVLL
61 RKLKQFQDLG HEIYFLIGDF TGMIGDPTGR SETRVALTKE QVLENAKTYE EQVFKILDPN
121 KTKVVFNSQW FSKMTVEDVI KLCAKYTVAR ILERDDFKKR FESGIPISIH ELIYPLFQAY
181 DSVALEADVE LGGTDQLFNL LIGRDIQKEY GQEPQIVITL PLLEGIDGVQ KMSKSFGNYI
241 GIMEPPFEMY GKIMSIPDHI MWKYYLLLTD FSEKEIEEMK EKVEKGEYHP KEVKKKLARY
301 IVSQFHSQEL ALKAEEEFER VFSKKEMPTE AITIKVKSGK IWLPGFLRDQ GLVKSSSEAK
361 RLISQKAIDL NKAPITQEEI ELFPGEYFLK IGKKKFIRLE VD
//