LOCUS AEH22379.1 778 aa PRT BCT 17-JUL-2013
DEFINITION Thermodesulfobacterium geofontis OPF15 cysteine synthase protein.
ACCESSION CP002829-262
PROTEIN_ID AEH22379.1
SOURCE Thermodesulfobacterium geofontis OPF15
ORGANISM Thermodesulfobacterium geofontis OPF15
Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales;
Thermodesulfobacteriaceae; Thermodesulfobacterium.
REFERENCE 1 (bases 1 to 1634377)
AUTHORS Elkins,J.G., Hamilton-Brehm,S.D., Lucas,S., Han,J., Lapidus,A.,
Cheng,J.F., Goodwin,L.A., Pitluck,S., Peters,L., Mikhailova,N.,
Davenport,K.W., Detter,J.C., Han,C.S., Tapia,R., Land,M.L.,
Hauser,L., Kyrpides,N.C., Ivanova,N.N., Pagani,I., Bruce,D.,
Woyke,T. and Cottingham,R.W.
TITLE Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing
Bacterium Thermodesulfobacterium geofontis OPF15T
JOURNAL Genome Announc 1 (2), E00162-13 (2013)
PUBMED 23580711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1634377)
AUTHORS Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S.,
Peters,L., Mikhailova,N., Davenport,K., Detter,J.C., Han,C.,
Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I.,
Hamilton-Brehm,S., Elkins,J. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4091115
Source DNA and organism available from James G. Elkins
(elkinsjg@ornl.gov)
Contacts: James G. Elkins (elkinsjg@ornl.gov)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Thermodesulfobacterium geofontis OPF15(T)
collection_date :: 21-Jul-2001
lat_lon :: 44.469 -110.639
depth :: Missing
alt_elev :: approx. 2280 m.
country :: USA
environment :: Fresh water hotspring
num_replicons :: 1
ref_biomaterial :: doi:10.1007/s00792-013-0512-1
biotic_relationship :: Free living
trophic_level :: Chemoautotroph
rel_to_oxygen :: Anaerobe
isol_growth_condt :: doi:10.1007/s00792-013-0512-1
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi09586
Funding Program :: DOE-BESC2010
Isolation Site :: Obsidian Pool, Yellowstone National Park,
Wyoming, USA
Isolation Comments :: isolated by James G. Elkins
Cell Shape :: Rod-shaped
Temperature Range :: 60-90C
Temperature Optimum :: 83C
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Thermodesulfobacterium geofontis OPF15"
/mol_type="genomic DNA"
/strain="OPF15"
/isolation_source="Obsidian Pool, Yellowstone National
Park"
/type_material="type strain of Thermodesulfobacterium
geofontis"
/db_xref="taxon:795359"
/country="USA: Wyoming"
/lat_lon="44.469 N 110.639 W"
/altitude="2280 m"
/collection_date="21-Jul-2001"
/collected_by="James G. Elkins"
protein /locus_tag="TOPB45_0265"
/EC_number="6.1.1.16"
/EC_number="2.5.1.47"
/inference="protein motif:TFAM:TIGR01136"
/note="TIGRFAM: Cysteine synthase K/M; Cysteinyl-tRNA
synthetase, class Ia; KEGG: dpr:Despr_3183 cysteine
synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta
subunit; Cysteinyl-tRNA synthetase, class Ia, N-terminal"
/transl_table=11
/db_xref="GO:0004124"
/db_xref="GO:0004817"
/db_xref="GO:0005524"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR002308"
/db_xref="InterPro:IPR005856"
/db_xref="InterPro:IPR015803"
BEGIN
1 MRFHNILQKI GNTPIIKLRN IKVKPSIEIW GKLESQNPGG SIKDRPALFM IEEAEKKGLL
61 TKDKIVIEAS SGNTGIGLSL VCAVKGYKCI IAMPESASIE RRKIMQAYGA EILLTPAEKG
121 TDGAIETVYE IWRNNPDKYY CTDQFNNDAN WLSHYKTTAP EILRDTEGKV THVVCGLGTT
181 GTAMGIARFV KDNNLPVKVI GVEPNPGHKI QGLKNMKESY PPSIYKKSLL EKVINIDDEE
241 AFYWARKLAK EEGIFVGMSS GAALAGALKL AETLDEGLIV VIFPDGGERY LSTPLWSFET
301 IRKELPKEVD LFLTNTFSGK REAFYPLIDK EVKIYTCGPT LNTRPHIGLY RRLITVDILK
361 SFLKLMGYKV IHVVNLTDFD DKTINTALEK DVDLRELTSK VEQEFYEDLD WLKIEKADFY
421 PKVSEHLEDM KKLAISILEK DKAYVKYSSL YFDISRFSEY GKLSKIDLSF LKPGATIDLE
481 EYDKEEPFDF ALLKRVQILE LKRGYFVETP FGKVRPTWHI HCASLVLKYL GEEIDIFTSG
541 NDLIFPHHEN TRAIAKALTG KELAKYWVHS GLVFYNGKKI SSENRITIED IKNKGFSGRV
601 LRFYFLRTHY RNRFNFSWKG LEESSKILEK IDRYIAYLGA TPENEKIEDK DKLWQILKDF
661 ENNWKEALKE DLNTPIVISE IISFFKKIYP YLKQGLPLDY KKEVLKSLKN LNKILKIFKF
721 PQVVEKRDIL EKIEIREKAK KEKNYELADR IREELEKEGF FIFDFSFGTR VVSLKEEL
//