LOCUS AEE73672.1 437 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana cyclophilin 38 protein.
ACCESSION CP002686-111
PROTEIN_ID AEE73672.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="CYP38"
/locus_tag="AT3G01480"
/gene_synonym="ARABIDOPSIS CYCLOPHILIN 38"
/gene_synonym="ATCYP38"
/gene_synonym="cyclophilin 38"
/gene_synonym="F4P13.3"
/gene_synonym="F4P13_3"
/inference="Similar to RNA sequence,
EST:INSD:AI992965.1,INSD:EL136117.1,INSD:EH929089.1,
INSD:EH842928.1,INSD:AV441755.1,INSD:EG508836.1,
INSD:BP781373.1,INSD:BP624614.1,INSD:EH830332.1,
INSD:DR296556.1,INSD:AV439942.1,INSD:ES086828.1,
INSD:CB262450.1,INSD:EL044295.1,INSD:ES118927.1,
INSD:EL116974.1,INSD:EL337440.1,INSD:DR296552.1,
INSD:AV789352.1,INSD:EL314360.1,INSD:EL989854.1,
INSD:AV802274.1,INSD:EH967894.1,INSD:EH801975.1,
INSD:EL014489.1,INSD:EL136489.1,INSD:EL289943.1,
INSD:EH875653.1,INSD:EL228570.1,INSD:EH823149.1,
INSD:EL259087.1,INSD:BP856616.1,INSD:ES158738.1,
INSD:EH859187.1,INSD:BP623389.1,INSD:BP650126.1,
INSD:EL139450.1,INSD:EH965253.1,INSD:EL030369.1,
INSD:ES007607.1,INSD:EH909802.1,INSD:AV822201.1,
INSD:EL197895.1,INSD:ES004018.1,INSD:DR296555.1,
INSD:EH872768.1,INSD:AV791225.1,INSD:DR296553.1,
INSD:EL082147.1,INSD:EH838245.1,INSD:BP600218.1,
INSD:EH994601.1,INSD:EH800180.1,INSD:EL073939.1,
INSD:EH881752.1,INSD:EL209686.1,INSD:EL261162.1,
INSD:AA395048.1,INSD:EH855175.1,INSD:EH821110.1,
INSD:EL293490.1,INSD:EL228316.1,INSD:EH890113.1,
INSD:EL063024.1,INSD:EH872196.1,INSD:EH973450.1,
INSD:EH818220.1,INSD:EL282815.1,INSD:EH950816.1,
INSD:BP864914.1,INSD:EL204783.1,INSD:EH802063.1,
INSD:EL235209.1,INSD:EL092155.1,INSD:BP847954.1,
INSD:F14183.1,INSD:EH991050.1,INSD:EH939816.1,
INSD:EL151175.1,INSD:EH847658.1,INSD:EL124633.1,
INSD:EH856522.1,INSD:EL275164.1,INSD:EL313606.1,
INSD:ES142119.1,INSD:AA712374.1,INSD:DR376199.1,
INSD:EL168661.1,INSD:BP790067.1,INSD:EL021497.1,
INSD:BP843868.1,INSD:EH892003.1,INSD:EL055550.1,
INSD:EL179318.1,INSD:EL242019.1,INSD:DR296554.1,
INSD:EL121815.1,INSD:EL220917.1,INSD:DR296551.1,
INSD:EL281942.1,INSD:BP790282.1,INSD:BP834025.1,
INSD:EL179303.1,INSD:ES070132.1,INSD:BP807815.1,
INSD:EH821014.1,INSD:EL177777.1,INSD:EH959446.1,
INSD:BP638504.1,INSD:AV797246.1,INSD:EL134457.1,
INSD:EL250938.1,INSD:AV797448.1,INSD:AV782892.1,
INSD:EL063287.1,INSD:DR347998.1,INSD:ES014923.1,
INSD:EH799866.1,INSD:EL168548.1,INSD:DR296557.1,
INSD:EL246315.1,INSD:T43100.1,INSD:AV817020.1,
INSD:EH954078.1,INSD:EL111865.1,INSD:EH901845.1,
INSD:BP844903.1,INSD:DR376400.1,INSD:BP782830.1,
INSD:DR296550.1,INSD:EL111983.1,INSD:EL335102.1,
INSD:BP862711.1,INSD:EL295772.1,INSD:EH900367.1,
INSD:DR296549.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY568524.1,INSD:BX823215.1,INSD:AY087781.1,
INSD:AY039843.1,INSD:AY113168.1"
/note="cyclophilin 38 (CYP38); FUNCTIONS IN:
peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN:
protein folding, photosystem II assembly, photosystem II
stabilization, defense response to bacterium; LOCATED IN:
in 6 components; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Cyclophilin-like (InterPro:IPR015891),
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
(InterPro:IPR002130); BEST Arabidopsis thaliana protein
match is: Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein (TAIR:AT3G15520.1); Has 2157
Blast hits to 2154 proteins in 676 species: Archae - 40;
Bacteria - 1435; Metazoa - 59; Fungi - 19; Plants - 86;
Viruses - 0; Other Eukaryotes - 518 (source: NCBI BLink)."
/db_xref="TAIR:AT3G01480"
/db_xref="Araport:AT3G01480"
intron_pos 48:0 (1/6)
intron_pos 146:0 (2/6)
intron_pos 212:2 (3/6)
intron_pos 291:1 (4/6)
intron_pos 339:0 (5/6)
intron_pos 363:0 (6/6)
BEGIN
1 MAAAFASLPT FSVVNSSRFP RRRIGFSCSK KPLEVRCSSG NTRYTKQRGA FTSLKECAIS
61 LALSVGLMVS VPSIALPPNA HAVANPVIPD VSVLISGPPI KDPEALLRYA LPIDNKAIRE
121 VQKPLEDITD SLKIAGVKAL DSVERNVRQA SRTLQQGKSI IVAGFAESKK DHGNEMIEKL
181 EAGMQDMLKI VEDRKRDAVA PKQKEILKYV GGIEEDMVDG FPYEVPEEYR NMPLLKGRAS
241 VDMKVKIKDN PNIEDCVFRI VLDGYNAPVT AGNFVDLVER HFYDGMEIQR SDGFVVQTGD
301 PEGPAEGFID PSTEKTRTVP LEIMVTGEKT PFYGSTLEEL GLYKAQVVIP FNAFGTMAMA
361 REEFENDSGS SQVFWLLKES ELTPSNSNIL DGRYAVFGYV TDNEDFLADL KVGDVIESIQ
421 VVSGLENLAN PSYKIAG
//