LOCUS AEE73617.2 274 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana polypyrimidine tract-binding protein
1 protein.
ACCESSION CP002686-43
PROTEIN_ID AEE73617.2
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="PTB1"
/locus_tag="AT3G01150"
/gene_synonym="ATPTB1"
/gene_synonym="POLYPYRIMIDINE TRACT-BINDING"
/gene_synonym="polypyrimidine tract-binding protein 1"
/gene_synonym="POLYPYRIMIDINE TRACT-BINDING PROTEIN 1"
/gene_synonym="PTB"
/gene_synonym="T4P13.16"
/gene_synonym="T4P13_16"
/inference="Similar to RNA sequence,
EST:INSD:ES105956.1,INSD:EL124653.1,INSD:EG427811.1,
INSD:T42135.1,INSD:DR299213.1,INSD:ES020955.1,
INSD:CF774130.1,INSD:DR371069.1,INSD:EH897835.1,
INSD:T04473.1,INSD:EL265989.1,INSD:EL191737.1,
INSD:DR299216.1,INSD:DR299214.1,INSD:BE530321.1,
INSD:DR299211.1,INSD:ES016377.1,INSD:EL252275.1,
INSD:BP794786.1,INSD:DR299215.1,INSD:DR299217.1,
INSD:DR299208.1,INSD:ES168313.1,INSD:DR299218.1,
INSD:AV807552.1,INSD:AV809137.1,INSD:DR299210.1,
INSD:EL028796.1,INSD:AV441089.1,INSD:EL263814.1,
INSD:AV829325.1,INSD:AV536210.1,INSD:DR299206.1"
/inference="Similar to RNA sequence, mRNA:INSD:BX823271.1"
/note="POLYPYRIMIDINE TRACT-BINDING (PTB); FUNCTIONS IN:
RNA binding, nucleotide binding, nucleic acid binding;
INVOLVED IN: pollen germination, regulation of RNA
splicing, regulation of translation; LOCATED IN: nucleus,
cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN:
28 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: polypyrimidine tract-binding protein 2
(TAIR:AT5G53180.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT3G01150"
/db_xref="Araport:AT3G01150"
intron_pos 7:0 (1/7)
intron_pos 28:0 (2/7)
intron_pos 84:2 (3/7)
intron_pos 104:0 (4/7)
intron_pos 139:0 (5/7)
intron_pos 166:1 (6/7)
intron_pos 204:0 (7/7)
BEGIN
1 MPIIGQVFSA FGFVHKIATF EKAAGFQALV QFTDVETASA ARSALDGRSI PRYLLSAHVG
61 SCSLRMSYSA HTDLNIKFQS HRSRDYTNPY LPVNQTAMDG SMQPALGADG KKVESQSNVL
121 LGLIENMQYA VTVDVLHTVF SAYGTVQKIA IFEKNGSTQA LIQYSDIPTA AMAKEALEGH
181 CIYDGGYCKL RLSYSRHTDL NVKAFSDKSR DYTLPDLSLL VAQKGPAVSG SAPPAGWQNP
241 QAQSQYSGYG GSPYMYPSSD PNGASPSGQP PYYG
//