LOCUS AEE27275.1 343 aa PRT PLN 20-JUL-2017
DEFINITION Arabidopsis thaliana Zinc finger (CCCH-type/C3HC4-type
RING finger) family protein protein.
ACCESSION CP002684-84
PROTEIN_ID AEE27275.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 30427671)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 30427671)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 30427671)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 30427671)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
protein /locus_tag="AT1G01350"
/gene_synonym="F6F3.14"
/gene_synonym="F6F3.15"
/gene_synonym="F6F3_14"
/gene_synonym="F6F3_15"
/inference="Similar to RNA sequence,
EST:INSD:BP637089.1,INSD:ES041235.1,INSD:EH937116.1,
INSD:DR379980.1,INSD:ES127789.1,INSD:AV524848.1,
INSD:BP638172.1,INSD:AU239237.1,INSD:BP834635.1,
INSD:BP811922.1,INSD:BP577944.1,INSD:BP596341.1,
INSD:BP570868.1,INSD:EL970299.1,INSD:BP834398.1,
INSD:EH977536.1,INSD:DR353000.1,INSD:BP825937.1,
INSD:ES190865.1,INSD:ES023733.1,INSD:BP840835.1,
INSD:BP568213.1,INSD:BP576565.1,INSD:AI997822.1,
INSD:BP844665.1,INSD:AV539694.1,INSD:BP828451.1,
INSD:ES093734.1,INSD:BP583835.1,INSD:BP819662.1,
INSD:ES085657.1,INSD:ES025456.1,INSD:EH992074.1,
INSD:DR352999.1,INSD:BP811937.1,INSD:BP583813.1,
INSD:ES031102.1,INSD:ES025911.1,INSD:EL264359.1,
INSD:EH822279.1,INSD:AU226158.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX814333.1,INSD:AK118376.1,INSD:BX817015.1"
/note="Zinc finger (CCCH-type/C3HC4-type RING finger)
family protein; FUNCTIONS IN: zinc ion binding, nucleic
acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger,
CCCH-type (InterPro:IPR000571), Zinc finger, RING-type,
conserved site (InterPro:IPR017907), Zinc finger,
RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana
protein match is: Zinc finger (CCCH-type/C3HC4-type RING
finger) family protein (TAIR:AT5G06420.2); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="Araport:AT1G01350"
/db_xref="TAIR:AT1G01350"
intron_pos 29:1 (1/2)
intron_pos 304:0 (2/2)
BEGIN
1 MSDSGEPKPS QQEEPLPQPA AQETQSQQVC TFFKKPTKSK NIRKRTIDAD EEDGDSKSES
61 SILQNLKKVA KPDSKLYFSS GPSKSSTTTS GAPERSVFHY DSSKEIQVQN DSGATATLET
121 ETDFNQDARA IRERVLKKAD EALKGNKKKA SDEKLYKGIH GYTDHKAGFR REQTISSEKA
181 GGSHGPLRAS AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFLHDRGDY KPGWQIEKEW
241 EEAEKVRKRN KAMGVEDEDD EADKDSDEDE NALPFACFIC REPFVDPVVT KCKHYFCEHC
301 ALKHHTKNKK CFVCNQPTMG IFNAAHEIKK RMAEERSKAE QGL
//