LOCUS AED90382.1 665 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNI-like superfamily protein protein.
ACCESSION CP002688-132
PROTEIN_ID AED90382.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 26975502)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 26975502)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 26975502)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
protein /locus_tag="AT5G01720"
/gene_synonym="F7A7.240"
/gene_synonym="F7A7_240"
/inference="Similar to RNA sequence,
EST:INSD:EH971110.1,INSD:BP838681.1,INSD:ES157889.1,
INSD:AV831599.1,INSD:AV530096.1,INSD:ES197841.1,
INSD:EH852755.1,INSD:AV524232.1,INSD:ES141206.1,
INSD:DR349128.1,INSD:BP816558.1,INSD:BE525539.1,
INSD:AA651109.1,INSD:BP828560.1,INSD:EH993152.1,
INSD:CB252999.1,INSD:EL004558.1,INSD:AV816937.1,
INSD:BP840029.1,INSD:BP819491.1,INSD:AU230138.1,
INSD:BP827837.1,INSD:BP840154.1,INSD:AV534404.1,
INSD:AU238890.1,INSD:DR288402.1,INSD:AV534461.1,
INSD:ES193526.1,INSD:EL156940.1,INSD:DR381930.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX832007.1,INSD:AY086589.1,INSD:AY091103.1,
INSD:AK229588.1,INSD:AY122938.1"
/note="RNI-like superfamily protein; FUNCTIONS IN:
ubiquitin-protein ligase activity; INVOLVED IN:
ubiquitin-dependent protein catabolic process; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 8 growth stages; CONTAINS InterPro
DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype
(InterPro:IPR006553); BEST Arabidopsis thaliana protein
match is: F-box family protein (TAIR:AT5G27920.1); Has
15959 Blast hits to 6468 proteins in 357 species: Archae -
0; Bacteria - 920; Metazoa - 6194; Fungi - 1434; Plants -
4975; Viruses - 16; Other Eukaryotes - 2420 (source: NCBI
BLink)."
/db_xref="TAIR:AT5G01720"
/db_xref="Araport:AT5G01720"
intron_pos 214:0 (1/7)
intron_pos 256:0 (2/7)
intron_pos 291:0 (3/7)
intron_pos 423:1 (4/7)
intron_pos 466:2 (5/7)
intron_pos 565:0 (6/7)
intron_pos 649:0 (7/7)
BEGIN
1 MKKVKQIRVL KPFDLLSEEL VFIILDLISP NPSDLKSFSL TCKSFYQLES KHRGSLKPLR
61 SDYLPRILTR YRNTTDLDLT FCPRVTDYAL SVVGCLSGPT LRSLDLSRSG SFSAAGLLRL
121 ALKCVNLVEI DLSNATEMRD ADAAVVAEAR SLERLKLGRC KMLTDMGIGC IAVGCKKLNT
181 VSLKWCVGVG DLGVGLLAVK CKDIRTLDLS YLPITGKCLH DILKLQHLEE LLLEGCFGVD
241 DDSLKSLRHD CKSLKKLDAS SCQNLTHRGL TSLLSGAGYL QRLDLSHCSS VISLDFASSL
301 KKVSALQSIR LDGCSVTPDG LKAIGTLCNS LKEVSLSKCV SVTDEGLSSL VMKLKDLRKL
361 DITCCRKLSR VSITQIANSC PLLVSLKMES CSLVSREAFW LIGQKCRLLE ELDLTDNEID
421 DEGLKSISSC LSLSSLKLGI CLNITDKGLS YIGMGCSNLR ELDLYRSVGI TDVGISTIAQ
481 GCIHLETINI SYCQDITDKS LVSLSKCSLL QTFESRGCPN ITSQGLAAIA VRCKRLAKVD
541 LKKCPSINDA GLLALAHFSQ NLKQINVSDT AVTEVGLLSL ANIGCLQNIA VVNSSGLRPS
601 GVAAALLGCG GLRKAKLHAS LRSLLPLSLI HHLEARGCAF LWKDNTLQAE LDPKYWKQQL
661 EEMAP
//