LOCUS AED90369.1 1155 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana BRCA2-like B protein.
ACCESSION CP002688-116
PROTEIN_ID AED90369.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 26975502)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 26975502)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 26975502)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
protein /gene="BRCA2B"
/locus_tag="AT5G01630"
/gene_synonym="ATBRCA2(V)"
/gene_synonym="BRCA2(V)"
/gene_synonym="BRCA2-like B"
/gene_synonym="F7A7.150"
/gene_synonym="F7A7_150"
/inference="Similar to RNA sequence,
EST:INSD:EL083723.1,INSD:EH957220.1,INSD:AU227536.1,
INSD:DR379270.1"
/inference="similar to RNA sequence,
mRNA:INSD:AJ488305.1,INSD:BT004117.1"
/note="BRCA2-like B (BRCA2B); FUNCTIONS IN:
single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED
IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic
acid-binding, OB-fold-like (InterPro:IPR016027), DNA
recombination/repair protein BRCA2, helical domain
(InterPro:IPR015252), DNA recombination and repair
protein, BRCA2 (InterPro:IPR011370), BRCA2,
oligonucleotide/oligosaccharide-binding 1
(InterPro:IPR015187), Breast cancer type 2 susceptibility
protein (InterPro:IPR015525), BRCA2 repeat
(InterPro:IPR002093); BEST Arabidopsis thaliana protein
match is: BREAST CANCER 2 like 2A (TAIR:AT4G00020.1); Has
281 Blast hits to 210 proteins in 91 species: Archae - 0;
Bacteria - 4; Metazoa - 134; Fungi - 18; Plants - 61;
Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink)."
/db_xref="TAIR:AT5G01630"
/db_xref="Araport:AT5G01630"
intron_pos 52:1 (1/19)
intron_pos 100:1 (2/19)
intron_pos 154:1 (3/19)
intron_pos 483:1 (4/19)
intron_pos 525:0 (5/19)
intron_pos 576:2 (6/19)
intron_pos 617:2 (7/19)
intron_pos 679:2 (8/19)
intron_pos 707:0 (9/19)
intron_pos 724:0 (10/19)
intron_pos 751:1 (11/19)
intron_pos 788:2 (12/19)
intron_pos 812:2 (13/19)
intron_pos 879:0 (14/19)
intron_pos 940:0 (15/19)
intron_pos 987:2 (16/19)
intron_pos 1008:2 (17/19)
intron_pos 1077:0 (18/19)
intron_pos 1135:0 (19/19)
BEGIN
1 MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE
61 ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD LQNTNCSIPQ TRQVDTAETM
121 PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV
181 SSAGLARAKA LLGLEEDDLN GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ
241 YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
301 GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE
361 NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA SDMAVNNSKG NGFIPRARQL
421 GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA
481 SSGLSVVSCD TLTSKKVLST RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA
541 DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
601 RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ
661 EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF VGQKLRILGA GLSGWATPTS
721 PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI
781 YPILYKERLG EKKSIVRSER IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE
841 EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
901 RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD
961 SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN LGEIPLSSEF DIAAYVVYVG
1021 DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC
1081 NLIKRAKDAT NEMWVAETTE NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR
1141 QRVLFIIGAC KSPSC
//