LOCUS AED90347.1 509 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana LMBR1-like membrane protein protein.
ACCESSION CP002688-84
PROTEIN_ID AED90347.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 26975502)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 26975502)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 26975502)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
protein /locus_tag="AT5G01460"
/gene_synonym="T10O8.170"
/gene_synonym="T10O8_170"
/inference="Similar to RNA sequence,
EST:INSD:BP865699.1,INSD:ES115394.1,INSD:EH980055.1,
INSD:ES015089.1,INSD:W43054.1,INSD:EH805853.1,
INSD:ES079886.1,INSD:EL972956.1,INSD:EL978699.1,
INSD:BP577633.1,INSD:ES066328.1,INSD:BP777596.1,
INSD:BP580890.1,INSD:AV808958.1,INSD:ES058672.1,
INSD:AV548573.1,INSD:EL164587.1,INSD:ES021574.1,
INSD:EH989321.1,INSD:ES184047.1,INSD:AV538129.1,
INSD:EL297477.1,INSD:EL301566.1,INSD:EH906382.1,
INSD:ES059636.1,INSD:EH859368.1,INSD:ES157284.1,
INSD:EL320410.1,INSD:EL017897.1,INSD:EH850088.1,
INSD:DR362649.1,INSD:ES146401.1,INSD:AV804746.1,
INSD:EH826817.1,INSD:EL104442.1,INSD:DR269546.1,
INSD:EL222240.1,INSD:ES083719.1,INSD:EH892503.1,
INSD:BP780727.1,INSD:EL175757.1,INSD:EL170995.1,
INSD:EL134969.1,INSD:ES097719.1,INSD:AV558344.1,
INSD:AV810629.1,INSD:ES039604.1,INSD:DR383432.1,
INSD:EL249322.1,INSD:ES085915.1,INSD:BP788146.1,
INSD:EH828938.1,INSD:AI999226.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY096440.1,INSD:AY072197.1"
/note="LMBR1-like membrane protein; CONTAINS InterPro
DOMAIN/s: LMBR1-like membrane protein, conserved region
(InterPro:IPR006876); BEST Arabidopsis thaliana protein
match is: LMBR1-like membrane protein (TAIR:AT3G08930.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink)."
/db_xref="TAIR:AT5G01460"
/db_xref="Araport:AT5G01460"
intron_pos 117:2 (1/13)
intron_pos 146:1 (2/13)
intron_pos 185:0 (3/13)
intron_pos 222:0 (4/13)
intron_pos 255:0 (5/13)
intron_pos 296:0 (6/13)
intron_pos 317:0 (7/13)
intron_pos 338:2 (8/13)
intron_pos 375:1 (9/13)
intron_pos 413:2 (10/13)
intron_pos 435:2 (11/13)
intron_pos 472:2 (12/13)
intron_pos 495:0 (13/13)
BEGIN
1 MGDFNLALVI VAIVVCVIVF ISSIYLLVNY QHPDDANQAY FPKFVVVFGL SIAMISILML
61 PADVANRHAC RHSIYNGACN LTLPMKDLWL AVYIVDAVLV FFIIPFAMFF YEGDQDKALG
121 KRIKSALIWV VTTAVVCALV LGILYGVIGK VDFSVRHLSS ATTTFPTSWQ FSNNQPCIGN
181 TARQCSAYTA NAASEKTWSM RTTFPEYVVA LATIVGSVLF TIFGGVGIAC LPLGLITAFI
241 RRPKAVITRS QYIKEATELG KKARDLKKAA DALHQEERSG AKGRKWRKNV KAVEKELLQL
301 EEDVNLLEEM YPQGEQAETA WAFTVLGYLA KFVLGILGLI VSVAWIAHII IYLLVDPPLS
361 PFLNEVFIKL DDVWGLLGTA AFAFFCFYLL LAVIAGAMML GLKLVFITIH PMKWGATLMN
421 SFLFNVGLIL LCSISVIQFC ATAFGYYAQA TAAQEIFGHT LQSLRGIKYL YKYNVFQIGF
481 VVLAGLTFLY YIAFGWRRKK PSGRFQLST
//