LOCUS AED90283.1 479 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana retinal-binding protein protein.
ACCESSION CP002688-4
PROTEIN_ID AED90283.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 26975502)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 26975502)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 26975502)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
protein /locus_tag="AT5G01010"
/gene_synonym="TOPTELOMERE.1"
/gene_synonym="TOPTELOMERE_1"
/inference="Similar to RNA sequence,
EST:INSD:DR187275.1,INSD:BP569895.1,INSD:DR187260.1,
INSD:BP826070.1,INSD:ES212707.1,INSD:EH965517.1,
INSD:EL220721.1,INSD:EL219028.1,INSD:AA650929.1,
INSD:EG492058.1,INSD:AV530507.1,INSD:DR187266.1,
INSD:DR187262.1,INSD:BP814352.2,INSD:DR187267.1,
INSD:DR187273.1,INSD:Z37634.1,INSD:BP815799.1,
INSD:BP847683.1,INSD:BP823082.1,INSD:BP828812.1,
INSD:DR187269.1,INSD:ES181058.1,INSD:ES124603.1,
INSD:EH956632.1,INSD:BP825768.1,INSD:DR187272.1,
INSD:AA395636.1,INSD:BP846130.1,INSD:ES052436.1,
INSD:EH866827.1,INSD:AU239579.1,INSD:BP835033.1,
INSD:ES206247.1,INSD:EL321475.1,INSD:BP812340.1,
INSD:BP821517.1,INSD:T21323.1,INSD:DR187265.1,
INSD:EL123288.1,INSD:BP575092.1,INSD:DR187259.1,
INSD:ES056933.1,INSD:ES065956.1,INSD:BP796965.1,
INSD:BP841170.1,INSD:BP800313.1,INSD:BP823070.1,
INSD:BP827398.1,INSD:EL033065.1,INSD:DR187268.1,
INSD:BP593388.1,INSD:DR187271.1,INSD:BP826832.1,
INSD:EL291281.1,INSD:BP567984.1,INSD:DR187270.1,
INSD:EH912904.1,INSD:EL093261.1,INSD:BP836409.1,
INSD:BP828424.1,INSD:ES029939.1,INSD:BP818936.1,
INSD:AV783961.1,INSD:CF773050.1,INSD:BP815149.1,
INSD:EL995855.1,INSD:ES113294.1,INSD:ES081715.1,
INSD:EL088227.1,INSD:BP800752.1,INSD:ES009815.1,
INSD:BP867737.1,INSD:ES214429.1,INSD:EH937758.1"
/inference="similar to RNA sequence, mRNA:INSD:BX841661.1"
/note="EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD
(InterPro:IPR009038); Has 85 Blast hits to 85 proteins in
21 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi
- 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3
(source: NCBI BLink)."
/db_xref="TAIR:AT5G01010"
/db_xref="Araport:AT5G01010"
intron_pos 54:1 (1/15)
intron_pos 97:0 (2/15)
intron_pos 141:1 (3/15)
intron_pos 193:2 (4/15)
intron_pos 220:0 (5/15)
intron_pos 233:2 (6/15)
intron_pos 272:2 (7/15)
intron_pos 299:2 (8/15)
intron_pos 320:2 (9/15)
intron_pos 338:0 (10/15)
intron_pos 363:0 (11/15)
intron_pos 388:2 (12/15)
intron_pos 420:0 (13/15)
intron_pos 432:0 (14/15)
intron_pos 457:0 (15/15)
BEGIN
1 MASTEGLMPI TRAFLASYYD KYPFSPLSDD VSRLSSDMAS LIKLLTVQSP PSQGETSLID
61 EANRQPPHKI DENMWKNREQ MEEILFLLSP SRWPVQLREP STSEDAEFAS ILRTLKDSFD
121 NAFTAMISFQ TKNSERIFST VMTYMPQDFR GTLIRQQKER SERNKQAEVD ALVSSGGSIR
181 DTYALLWKQQ MERRRQLAQL GSATGVYKTL VKYLVGVPQV LLDFIRQIND DDGPMEEQRE
241 RYGPPLYSLT KMVIAIRVFL TLLWERYDTF KLSKDQMNLL SEAAIVYTSE FERFVTFISD
301 VFANSPFFIS ADTAGILWSR DNEEYKEIIV QAGRTYEISL MVESENSYIA WDFSLMQGKI
361 SMLPYIRFLL LYLLLFLPDS GYLCFHTYFC CLSSVYISVV FYQDIGFSVE YINASGEKTL
421 ILPYRRYEAD QGNFSTLMAG NYKLVWDNSY STFFKKTLRY KVDCIAPVVE PDPEPEPLN
//