LOCUS AEC05405.1 1113 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DEA(D/H)-box RNA helicase family
protein protein.
ACCESSION CP002685-22
PROTEIN_ID AEC05405.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G01130"
/gene_synonym="F10A8.28"
/inference="Similar to RNA sequence,
EST:INSD:BP810813.1,INSD:AU229921.1,INSD:BE522980.1,
INSD:BE522979.1"
/note="DEA(D/H)-box RNA helicase family protein; FUNCTIONS
IN: in 6 functions; INVOLVED IN: biological_process
unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; CONTAINS
InterPro DOMAIN/s: Helicase-associated domain
(InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box
type, N-terminal (InterPro:IPR011545), Domain of unknown
function DUF1605 (InterPro:IPR011709), Double-stranded
RNA-binding (InterPro:IPR001159), Double-stranded
RNA-binding-like (InterPro:IPR014720), DEAD-like helicase,
N-terminal (InterPro:IPR014001), DNA/RNA helicase,
C-terminal (InterPro:IPR001650), Helicase, superfamily
1/2, ATP-binding domain (InterPro:IPR014021); BEST
Arabidopsis thaliana protein match is: DEA(D/H)-box RNA
helicase family protein (TAIR:AT1G48650.2); Has 13137
Blast hits to 8990 proteins in 1526 species: Archae - 10;
Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants -
978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI
BLink)."
/db_xref="Araport:AT2G01130"
/db_xref="TAIR:AT2G01130"
intron_pos 48:0 (1/18)
intron_pos 101:2 (2/18)
intron_pos 131:0 (3/18)
intron_pos 206:0 (4/18)
intron_pos 238:0 (5/18)
intron_pos 301:0 (6/18)
intron_pos 354:1 (7/18)
intron_pos 398:0 (8/18)
intron_pos 454:0 (9/18)
intron_pos 545:0 (10/18)
intron_pos 610:0 (11/18)
intron_pos 678:0 (12/18)
intron_pos 701:1 (13/18)
intron_pos 751:0 (14/18)
intron_pos 853:0 (15/18)
intron_pos 873:0 (16/18)
intron_pos 924:0 (17/18)
intron_pos 961:0 (18/18)
BEGIN
1 MTNRLPPSLY VPPHQRLGSD YGFNPVPLSP VRYVSAYDDR VSEDRQPQEG TFHCADLDDW
61 NKRFSMLLKD SLKQEVISRE KKDRRDFDKL AALATTLGLY SHAYAKVVVF SKIPLPNYRF
121 DLDDKKPQRE VNLHTDLLQR VEAYLTEYLS KSSNRIDRVP ANSVSRTSSI SSTDEWFSEQ
181 PLPISATKIL WQRSLQLRDR QQYWQASVEG QRMLDSRTSL PAFKQRHSVL TAISQNQVIV
241 ISGETGCGKT TQIPQFILES EIEANRGAFS SIICTQPRRI SAMSVSERVA YERGEQLGES
301 VGYKVRLEGV KGRDTRLLFC TTGILLRRLL VDRNLRGVTH VIVDEIHERG MNEDFLLIIL
361 KDLLSRRSEL KLILMSATLD AELFSSYFGG AGVIYIPGFT YPVRSHFLED ILEMTRYRLT
421 PYNQIDDYGQ ERTWKMNKQI PKKRKSQITF VVEDALRAAD FKEFSPETRE SLSCWYPDCI
481 GFNLIEFLLC NICENEGPGG ILIFLTGWDD ISSLKEKLQI HPIFGNPDLV MLLACHGSME
541 TFEQRLIFEE PASGVRKIVL ATNIAETSIT INDVAFVIDC GKAKETSYDA LNNTPCLLPS
601 WISKVSAQQR RGRAGRVRPG QCYHLYPKCV YDAFAEYQLP EILRTPLHSL CLQIKSLNLG
661 SISEFLSRAL QSPELLAVQK AIAFLKIIGA LDENEDLTTL GRYLSKLPME PKLGKMLILG
721 AILGCLDPIL TVAAGLSVRD PFLTPQDKKD LAEAAKSQFS RDHSDHLALV RAYEGWKKAE
781 EESAVYDYCW KNFLSIQSLR AIDSLRKEFF SLLKDTGLID GNPSICNSEG NDANLTRAVI
841 CYGMYPGICS VVHNERSFSL KTMEDGQVLL YSNSENARET KIPYPWLVFN EKIKVNSVFL
901 RDSTACSDST LILFGGSISK GDTDGHLKML GGYLEFFMKP DVAEIYQTLK KELDELIQNK
961 LLNPKVDMQA HRELLSAIRL LVSEDGCDGR FVFGHQILRP LEISALSTKP SLFSRTESGP
1021 GGDNSKSQLQ TILTRAGYTV PMYKTKQLKN NKFQTTVEFN ETQIMGQPCS NKKSAEKDAA
1081 AEAIQWLKGG AKESHEQVNH MSKLLKKGKK DHL
//