LOCUS ADU50012.1 949 aa PRT BCT 08-JAN-2015
DEFINITION Intrasporangium calvum DSM 43043 ATPase, P-type (transporting)
, HAD superfamily, subfamily IC protein.
ACCESSION CP002343-3450
PROTEIN_ID ADU50012.1
SOURCE Intrasporangium calvum DSM 43043
ORGANISM Intrasporangium calvum DSM 43043
Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae;
Intrasporangium.
REFERENCE 1 (bases 1 to 4024382)
AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S.,
Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S.,
Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.
and Lapidus,A.
TITLE Complete genome sequence of Intrasporangium calvum type strain (7
KIP)
JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010)
PUBMED 21304734
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Intrasporangium calvum DSM 43043
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083316
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Intrasporangium calvum 7KIP, DSM 43043
collection_date :: 1967
lat_lon :: 55.753 37.604
depth :: Missing
alt_elev :: Missing
country :: Russia
environment :: Air
num_replicons :: Missing
ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989,
IMET 7816, JCM 3097, KCC A-0097, NBRC 12989,
NCIB 10167
biotic_relationship :: Free living
trophic_level :: Chemoorganotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02320
Type Strain :: Yes
Greengenes ID :: 90541
Funding Program :: DOE-GEBA 2007
Number of Reads :: 847906 pyrosequencing, 11758818 Illumina
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Air in a school dining room
Isolation Comments :: isolated by L.V. Kalakoutskii
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: Gram+
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Intrasporangium calvum DSM 43043"
/mol_type="genomic DNA"
/strain="DSM 43043"
/isolation_source="air in a school dining room"
/culture_collection="DSM:43043"
/type_material="type strain of Intrasporangium calvum"
/db_xref="taxon:710696"
/country="Russia"
/lat_lon="55.753 N 37.604 E"
/collection_date="1967"
/collected_by="L.V. Kalakoutskii"
protein /locus_tag="Intca_3538"
/note="COGs: COG0474 Cation transport ATPase;
InterProIPR004014: IPR008250: IPR005834: IPR006068: IPR
001757: IPR000695: IPR018303; KEGG: bcv:Bcav_4202 ATPase,
P-type (transporting), HAD superfamily, subfamily IC;
PFAM: E1-E2 ATPase-associated domain protein; cation
transporting ATPase domain protein; Haloacid dehalogenase
domain protein hydrolase; SPTR: ATPase, P-type
(Transporting), HAD superfamily, subfamily IC; TIGRFAM:
ATPase, P-type (transporting), HAD superfamily, subfamily
IC; PFAM: E1-E2 ATPase; Cation transporting ATPase,
C-terminus; Cation transporter/ATPase, N-terminus;
haloacid dehalogenase-like hydrolase; TIGRFAM:
plasma-membrane calcium-translocating P-type ATPase;
ATPase, P-type (transporting), HAD superfamily, subfamily
IC"
/transl_table=11
BEGIN
1 MTTTAFDIPD PTLRPADQVA QALGVDPEVG LTDATADERL ADEGPNELRG RPPVPLWRKV
61 LRQLQDPLVY LLLVAIVISL VAWAGEGGES WPVDAIVIAL IVVANAVLGL VQEAKAASAV
121 AALASMTAAS SSVLRGGRLR TVRSTALVRG DVLNLSEGDS VGADARLLSA TGLRLQEASL
181 TGESGTTPKS ADPLGGPTAL GDRRNMVYRG TAVVQGVGRA VVTSTGMDTE MGRIAELLDR
241 TDQEPSPLRR EIGSVSKTLG LLVIGIAVVV MAAIALLNGV HDLTDAATIL LMGVSLAVAA
301 VPEGLPAILS LVLALGVRVM ARRNAVMKDL HSVETLGSAS VICSDKTGTL TRNEMTLSRI
361 ITPSGRVELS GTGYRPEGEA RYRPTDGSEA DLVREARNVV VAGALANNAQ LLEEAGEWTI
421 QGDPTEAAFL VALRKLEDAE RVAACYERAA EVPFTSQRKM MSILGHHLDE DEHRLFVKGA
481 PDVLLGHCDT VRCGDAVVSL DEAQRAGFLR AVDDLSVGAY RTLGVAYRDV DVAGIPTLAG
541 TDRPLLDESA ETGLVLLGVV GIIDPPRDEA RQAVAEAHRA GIRTVMITGD HPGTAARIAA
601 DLGISQPGQR VLTGADLDAL GDEDLRRAVL DTAVYARVAP EHKLRIIDGL QSHGLVVAMT
661 GDGVNDAPAL KSADIGIAMG ITGTEVTKES SRMILGDDNY ATIVDAVRQG RVIFDNIKKF
721 LRYLLSSNLG EVATVFFGVV LAGLIGLSEA DESGAIVLPL LATQILWINL VTDSGPALAM
781 GVDPEVDDVM ARPPRRQSDR ILDGRMWRRI GFIGAVMAAV TLLTIDAVLP GGLLHGSGSL
841 AAARTAGFTT LVLAQLFNAL NSRSDESSAF RHLSNNRWLW GAIALAVALQ GAVVSVPFLQ
901 AAFGTETLSW GQWALCLGLA SVVLWLEELS KLVRRRRHSR ARSEPRERP
//