LOCUS ADU49908.1 1043 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 SNF2-related protein protein. ACCESSION CP002343-3346 PROTEIN_ID ADU49908.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_3428" /note="COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR000330: IPR001650: IPR014021: IPR014001; KEGG: mtf:TBFG_12135 helicase HelZ; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Helicase helZ; manually curated; PFAM: SNF2 Helicase protein; Helicase conserved C-terminal domain; SNF2 family N-terminal domain" /transl_table=11 BEGIN 1 MLVLHGFWSP DRGLRLWAED SERTVTSPSQ AVRSARPHPF AASEDTLAGL GTGTLGEAVL 61 QLPSLARSPL DSPELVRATP RSAARSRPAL LPWRVATLDV PPADALAWLL AVADGVDGVD 121 VRGGNDSDVR HGASVGYWAD VASWAGELVD RRRVLPAVAT DAGRPVALWR PALQGQDVVA 181 FGALVAAMPP VCRAEPVHSD AHELVVTAVQ TFTDVGMRRS MGPGLDLVPP RRGRRPRQTP 241 TAEAWLAALT APNGHFEADP TEVDRLGLEL ASWAEVATGR MGPARATFRL SEIEPVAGDD 301 GTAVAAAEED SSDGTAVSPA STRWRLEFLL QSTTDPSLIV PAAQAWADDG SLRRWLDRPQ 361 EMLLGELGRA SRVYPALSAG LRQARPESVE LDADGTYRFL SEAAPALDEA GFGLLLPAWW 421 DRRSRLGLKA TASTRRDAAV TGGSFGRDAL VDFQWRLAVG DESLTDDEIA ALSEAKAPLV 481 RLRGKWVAVD AEQLRRGLEF LRREPAPVRT VAEVLALAAA HPADVDTPLP VTGVAADGWL 541 GDLLGGSVGG GSGDSVTRVE PPATFTATLR PYQARGLAWL SFLSTLGLGS CLADDMGLGK 601 TVQLLALEAT QRAADPQAGP SLLLCPMSLV GNWEREAARF APALRVYAHH GRERLRGAEL 661 SQRLATTDLM LTTYATATRD IDDLAGHDWH RVVLDEAQAI KNSLSRTARA ARRLRAGHRV 721 ALTGTPVENR LSELWSIMDF VNPGMLGTSQ SFRTRYAIPV ERHGATEPAE RLRTITRPYI 781 LRRLKSDPTI IDDLPEKLEL KEYCRLTVEQ ASLYQTIVDD MMARIEGSEG IERRGNVLAA 841 MAKLKQVCNH PAQVLHDRSA IGSRSGKVIR LEELLEEILA EGDRVLCFTQ YTEFAEMLVP 901 HLSARFDTDV AYLHGGTPKK RRDELVTQFQ GDGGAPIFLL SLKAGGTGLN LTAANHVIHL 961 DRWWNPAVEN QATDRAYRIG QQRRVQVRKF VCTGTLEEKI DQMIEEKLAL ANLVVGDGER 1021 WLTELSTDQL RSLFALSEEA VGE //