LOCUS ADU48990.1 1682 aa PRT BCT 08-JAN-2015
DEFINITION Intrasporangium calvum DSM 43043 glutamate dehydrogenase
(NAD) protein.
ACCESSION CP002343-2428
PROTEIN_ID ADU48990.1
SOURCE Intrasporangium calvum DSM 43043
ORGANISM Intrasporangium calvum DSM 43043
Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae;
Intrasporangium.
REFERENCE 1 (bases 1 to 4024382)
AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S.,
Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S.,
Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.
and Lapidus,A.
TITLE Complete genome sequence of Intrasporangium calvum type strain (7
KIP)
JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010)
PUBMED 21304734
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Intrasporangium calvum DSM 43043
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083316
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Intrasporangium calvum 7KIP, DSM 43043
collection_date :: 1967
lat_lon :: 55.753 37.604
depth :: Missing
alt_elev :: Missing
country :: Russia
environment :: Air
num_replicons :: Missing
ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989,
IMET 7816, JCM 3097, KCC A-0097, NBRC 12989,
NCIB 10167
biotic_relationship :: Free living
trophic_level :: Chemoorganotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02320
Type Strain :: Yes
Greengenes ID :: 90541
Funding Program :: DOE-GEBA 2007
Number of Reads :: 847906 pyrosequencing, 11758818 Illumina
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Air in a school dining room
Isolation Comments :: isolated by L.V. Kalakoutskii
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: Gram+
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Intrasporangium calvum DSM 43043"
/mol_type="genomic DNA"
/strain="DSM 43043"
/isolation_source="air in a school dining room"
/culture_collection="DSM:43043"
/type_material="type strain of Intrasporangium calvum"
/db_xref="taxon:710696"
/country="Russia"
/lat_lon="55.753 N 37.604 E"
/collection_date="1967"
/collected_by="L.V. Kalakoutskii"
protein /locus_tag="Intca_2483"
/EC_number="1.4.1.2"
/note="COGs: COG2902 NAD-specific glutamate dehydrogenase;
InterPro IPR007780; KEGG: bcv:Bcav_1575 NAD-glutamate
dehydrogenase; PFAM: NAD-glutamate dehydrogenase; SPTR:
Putative uncharacterized protein; PFAM: Bacterial
NAD-glutamate dehydrogenase"
/transl_table=11
BEGIN
1 MSAPLEQSRI DVLQAAAAAL TTPSPKGAAT SRTRGRAKAG PAPQDGSNAF LKAYYRLVAT
61 EDLIAREPAE LASIAMGHRE FAQHRPVGTF NVRVTNADVD AAGHDVKYTN VDIVLDDMPF
121 LVDSVVAALG GFDRGVHIIV HPQMNVTRTV TGELVDVVTE PTTEIPDEVA LVRESWMHLE
181 IDRLPASAIP EVEERLRHVL QNVRDAVEDW PKMRAHALTI ASELKSATPP GTSPHEAREA
241 SRFLEWLAHN NFTFLGYREY SLSREEGNDV SRQVPGTGLG LLRYDRPQAG TGIVLTPAAS
301 RAARDSTILI ITKANSRATV HRDVYLDYIS VKKFNARGEC VGEQRFLGLY ASPAYNDTIH
361 DIPLLDVRAQ EVLRLTGLTP ESHSGKDILQ ILETYPRDEL FQTSAAQLAE VATSVLHIQE
421 RRKTKLFLRR DEFGRFMSCL VYLPRDRYNT TVRLRIQSVL LEAFGGDSID FTTRVSESTL
481 ARLHFVVRMP SGVEIPEVDS DALEQRVVEA TRTWDEDLVE ELSRRRDAEA TARAMADYAK
541 ALPEAYKEDF GVGIAADDLD RVEALGEGPT ATALHLYRDP NSKDPQERRL KLYRRGRLSL
601 TQVLPFFTHL GVEVTDERPY ELQGSEFGEL HIYDFGLRVD SAQWAEGAAA ADVKDRFEEA
661 FRAVWAGETE SDGFNALVLV AGLTSRQIVI LRAVAKYLRQ SGSTFSQEYV ESALVAHPHV
721 ARGLVDLFEA RFDPERFPDT EAGRTKRESR AKAHVATIRE ALDEVASLDH DRIIRALLGV
781 IRAGLRTNFY QPDESGAPKP YVALKLDPKR VPDLPAPRPM YEIWVYSPRV EGVHLRFGKV
841 ARGGLRWSDR REDFRTEVLG LVKAQMVKNA VIVPTGSKGG FYPKQLPNPA VDRGAWLDEG
901 IASYRMFISG LLDVTDNLVS GEVVAPRRVV RHDDDDTYLV VAADKGTAKF SDIANGISAD
961 YGFWLDDAFA SGGSAGYDHK GMGITARGAW ESVKRHFREM GVDTQSEPFT VVGVGDMSGD
1021 VFGNGMLLSE HIRLVAAFDH RHIFVDPDPD PGPSFAERRR LFDLPGSSWA DYDRSLIAKG
1081 GGVFDRSLKS VPVTPQMVQA LGLRPQTKSL TPAELMKAIL LAPVDLLWNG GIGTYVKAST
1141 ETNSEIGDRA NDAIRVNGAD LRCKVAGEGG NLGASQLGRI EAALAGVRIN TDAIDNSAGV
1201 DTSDHEVNIK ILLTGLTRTG EMTMKRRNAL LASMTDEVAE QVLRDNYEQN VLLGNARAQE
1261 HAMLPVHERL IQFLEEHGDL DRALEFLPSD AEIARRQKAG AGLTSPEFSV LVAYSKLHLK
1321 NQLITSSLPE DAWFGTTLAE YFPTPLRRKF ADQIATHPLR REIITNAVAN SMINRGGITF
1381 TYRAVEETGA SPEQVARAYV VCREVFDLAG YVARVEETDN VVTTAAQTSL YLEFRRLLDR
1441 AIRWFLTTRP ATLDIAAEVD RFRPGIAALG GRMSQLLQGR EQARLLGRAK EFEAKGVPED
1501 LALSAASLLD SYSLLDCIEI AADTGETLDD VAAVYFLTSD TFSIDAMLNR VTSLPRENRW
1561 DAMARGALRD DLYAVLDILT RSVLEVSRPG EPADQRLAEW SELNADALHR AKAALGGIER
1621 MSYAGIAALS VALRTLRTVT KPASSSTATS RPAVPEQPAK APAPRATAKR TSTKKASSQP
1681 SR
//