LOCUS ADU48570.1 923 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 2-oxo-acid dehydrogenase E1 subunit, homodimeric type protein. ACCESSION CP002343-2008 PROTEIN_ID ADU48570.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_2059" /EC_number="1.2.4.1" /note="COGs: COG2609 Pyruvate dehydrogenase complex dehydrogenase (E1) component; InterPro IPR004660; KEGG: kra:Krad_3340 pyruvate dehydrogenase subunit E1; SPTR: Pyruvate dehydrogenase E1 component; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: Transketolase, thiamine diphosphate binding domain; TIGRFAM: pyruvate dehydrogenase E1 component, homodimeric type" /transl_table=11 BEGIN 1 MAAEAGPILN GIPSQLPDTD PEETQEWLES LDAVLDEKGR TRARYVMLKL IERARAKQVG 61 VPSLTATDYI NTIPPEREPW FPGDEEVERE FRRYVRWNAA MMVHRAQRPD IGVGGHISTY 121 ASAATLYEVG FNHFFRGKDH PGGGDQIFFQ GHASPGMYAR SFLEGHLTET DLDGFRQEKS 181 HIVDGTIRAV PSYPHPRLLP DYWEFPTVSM GLGPMNAVYQ AQFNKYLHNR GIKDTSQQHV 241 WAFLGDGEMD EPESRGALQI AANEELDNLT FVINCNLQRL DGPVRGNGKI IQELEAFFRG 301 AGWNVIKAVW GRGWDPLLAA DRDGALVHIM NQTSDGDYQT FRANDGKYVR DHFFGRDPRT 361 LKMVEHWTDD QIWWNLRRGG HDYRKVYAAY KAAMEHTGQP TVILAKTIKG YGLGSHFAGR 421 NATHQMKKMT LEDLKQFRDS LRIPITDEQL EANPYQPPYY HPGPDHPAVK YSVERRAKLG 481 GTLPKRRVAF DPIKLPGDEA YAQVKKGSGK QEVATTMAFV RLLKDLLRDK EFGKRIVPII 541 PDEARTFGMD AFFPTIKIYN PNGQNYTPVD AELMLAYREN EQGQILHLGI NEGGSVAAFT 601 AAGSSYATHG EPMIPVYVFY SMFGFQRTGD GLWAAADQMT RGFLIGATAG RTTLTGEGLQ 661 HADGHSPLLA STNPAVVHYD PAYGYEIAHI VQDGLRRMYG EGQSGDAANL IYYLTVYNEP 721 IVQPQEPENL DVDGLLKGMY RLAPARTEGW QHTPARAQLL ASGVGLPWAL EAQQLLADDW 781 GVAADVWSVT SWNELRRDGL AADEQQFLHP DEERRVPWVT QCLQDGEGPV IGVSDYMRAV 841 QDQIREWVPG TYATLGADGF GFSDTRRAAR RFFHIDGPSV AVRALQLLAD EGKVPADVPR 901 QAAERYRLDD VTAGTSGNAG GES //