LOCUS ADU48011.1 1333 aa PRT BCT 08-JAN-2015
DEFINITION Intrasporangium calvum DSM 43043 ATP-dependent helicase
HrpA protein.
ACCESSION CP002343-1449
PROTEIN_ID ADU48011.1
SOURCE Intrasporangium calvum DSM 43043
ORGANISM Intrasporangium calvum DSM 43043
Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae;
Intrasporangium.
REFERENCE 1 (bases 1 to 4024382)
AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S.,
Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S.,
Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.
and Lapidus,A.
TITLE Complete genome sequence of Intrasporangium calvum type strain (7
KIP)
JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010)
PUBMED 21304734
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Intrasporangium calvum DSM 43043
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083316
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Intrasporangium calvum 7KIP, DSM 43043
collection_date :: 1967
lat_lon :: 55.753 37.604
depth :: Missing
alt_elev :: Missing
country :: Russia
environment :: Air
num_replicons :: Missing
ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989,
IMET 7816, JCM 3097, KCC A-0097, NBRC 12989,
NCIB 10167
biotic_relationship :: Free living
trophic_level :: Chemoorganotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02320
Type Strain :: Yes
Greengenes ID :: 90541
Funding Program :: DOE-GEBA 2007
Number of Reads :: 847906 pyrosequencing, 11758818 Illumina
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Air in a school dining room
Isolation Comments :: isolated by L.V. Kalakoutskii
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: Gram+
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Intrasporangium calvum DSM 43043"
/mol_type="genomic DNA"
/strain="DSM 43043"
/isolation_source="air in a school dining room"
/culture_collection="DSM:43043"
/type_material="type strain of Intrasporangium calvum"
/db_xref="taxon:710696"
/country="Russia"
/lat_lon="55.753 N 37.604 E"
/collection_date="1967"
/collected_by="L.V. Kalakoutskii"
protein /locus_tag="Intca_1496"
/note="COGs: COG1643 HrpA-like helicase;
InterProIPR010222: IPR001650: IPR007502: IPR011709: IPR
014001: IPR003593: IPR014021; KEGG: stp:Strop_1712
ATP-dependent helicase HrpA; PFAM: protein of unknown
function DUF1605; helicase-associated domain protein;
helicase domain protein; SMART: DEAD-like helicase; AAA
ATPase; helicase domain protein; SPTR: ATP-dependent
helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA;
manually curated; PFAM: Helicase conserved C-terminal
domain; Helicase associated domain (HA2); Domain of
unknown function (DUF3418); Domain of unknown function
(DUF1605); DEAD/DEAH box helicase; TIGRFAM: ATP-dependent
helicase HrpA"
/transl_table=11
BEGIN
1 MPEDRSAAPT ARSGSGRRRA GAPTGQRRSS GARARGRMPL SSDALAARRA ARAGLVPAIS
61 YPEHLPVVER RDDIAAAIRD HQVVVIAGET GSGKTTQIPK ICLELGRGLD GLIGHTQPRR
121 IAARAVAERL SEELEVELGS TIGYQVRFTD QSTRHTLVKV MTDGILLAEL QRDRELRRYD
181 TIIIDEAHER SLNIDFILGY LKQLLPRRPD LKVIITSATI DPERFARHFA ASDGTPAPVI
241 EVSGRTYPVE VRYRPLIDPD RPDDDERDMI TGICEAVEEL WTERHAGPSS DILVFLSGER
301 EIRDAADALN GLQLPVTEVV PLYARLSAAE QHRVFQPHTG RRIILATNVA ETSLTVPGIR
361 YVIDTGTARI SRYSQRTKVQ RLPIEPVSQA SANQRSGRCG RVSEGIAIRL YSEDDYRSRP
421 EFTDPEILRT NLASVILQMT SLGLGDIARF PFLDPPDSRQ ITDGIRLLEE LQAFAPEEET
481 QPTPKGRRRP GRRLTAYGRT IATLPIDPRH ARMVIEADRR GVLREVLVIV AALSIQDPRE
541 RPQDKQELAN AAHKRFADES SDFLSWLKLW AHLKEQQRAL SSSAFRRMCK AEFLHYLRVR
601 EWQDLHAQLK QAAKQVGLDV TRGRVRTGEG EVDADAVHQS LLAGLLSHVG VRDEQRREYL
661 GARGARFGIS PGSALFRKQP QFVMAEELVE TTRLWARMNA RIDPVWAEEL GDHMVKRQYS
721 EPRWSGRRGS AVATERVTLY GVPLVVGRTT GLSKVDPELA RDLFIRHALV EGDWPSEHRF
781 LRENAALLER VGELEARARR RDISVDDSVL VAFYDQRVPG DVVSGRHFDT WWKRARRETP
841 DLLTFTEDLL LRGGSTHLEV EDHPTTWRQG ELELEVTYQF DPGSELDGAT VHVPVERLNQ
901 VRADGFDWQV RGFREELVTA LIRSLPKTTR RHLVPTPDHA RAVLPELDPA EGRLVDALAA
961 ALRRRAGVAV SPDDFDWDRV PGHLRVTFSV DAPDGERVAV GKDLEAVRES ATPQLRRRVR
1021 AASAGIERRG LTSWDLDRVP ETFESAAGIQ GYPALVDTGA AVDLRVLPTR AEADAEHRLG
1081 VRRLLLLGIS PPWKQILARL TNVQKLALGH NPHGSVPALL ADCLAAAVDS ISAEVVAGGA
1141 RPAGPVPAGS RPSSPGGIRT REDFEWALSA VRTHTSARVV QVVGLVEPVL ARHLSITNRL
1201 AELDRSSSPA IRPMLADVRA QVSELIRPGF VAATGLGRLR DLDRYLRAVE HRLDKGPADP
1261 ARDAQALDQV DLVEGRYADL LEALRPSQQE SAEVLEVAWM IEELRVSLFA QALGTAYSVS
1321 PQRVLKAIAR LAP
//