LOCUS ADU47976.1 871 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 transcriptional regulator, LuxR family protein. ACCESSION CP002343-1414 PROTEIN_ID ADU47976.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_1461" /note="COGs: COG3899 ATPase; InterPro IPR000792: IPR019734; KEGG: sti:Sthe_2247 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; Tetratricopeptide repeat; SPTR: Transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family" /transl_table=11 BEGIN 1 MLVERDHQLH TLGAYLDEAA AGHGRLIYVS GEAGIGKSAL VNTFTASAAP QARAAVAYCD 61 GSLTPSPLAP LRELLPTLPP GLWPDDATRQ VILTSLLGAL REPPGSVPYL LVVEDAHWAD 121 QATLDLLLHL ARRIHTCRAL VVVTYRREDV DAIHGLRQLL GDSASATGTR RLDVPPLSRD 181 AVATLVARNA GSQPLGSGVD VTRLHEITHG NAFYVTEVLS SGLDTVPEQC RDAILARVAN 241 LPETTQQALE VVALAGARAE VDLLEELLRD GLAALDDALA RGLLVEADGA VTFRHELARI 301 VVAEQVPIGR RIHQHRRLLA ALEARGADPA RLAHHADAAG LSQSAVAHAT VAGRRASDLG 361 AHREAARQFE RALAHAARLH GTGLPDEQIA DLYWSLGYEL YVTGRIGEAS VAVEEARDLW 421 EAQGATTRVG DAWRCLSRLL WFEGRNADAE AAAEQALDVL EGPPTPELAY AYSNMTQLRM 481 LTSDSAATRT WGARTLSLLD SLEEGRARTE LRAHALNNLG TIEVVAGDRA AGIAMLEESL 541 DLSRRAEMHE HAARAYLNLA SSAIAQRRHD DAQRSLAEGI EYCTERDLDS WTNYLLGCDS 601 ELQVQRGDLG AAERSAETVL AHPSLASSAA LSPLVSLAHV RGQRGEGGYE DLVTRAAALA 661 EGIGEVQAVA PVAALRSELS WLARRDADAG AIATTVVELV ERADCPWNRG SVLRWLPQGA 721 PGTHREVAPP FAAELAGEWA EAARLWESLG CPFDEALALA RSGDADALTR AAGIFDEIKA 781 HAGAARCRAD LRSLGRTPPR APGRTTRDHP DGLTRRESEV AALLARGLSD SAIAERLVIS 841 RRTAEHHVSS ILAKVGVGSR RDLAEWYAAS E //