LOCUS ADU47966.1 1383 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 hypothetical protein protein. ACCESSION CP002343-1404 PROTEIN_ID ADU47966.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_1451" /note="COGs: COG1196 Chromosome segregation ATPase; InterPro IPR013496; KEGG: sma:SAV_7224 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein TIGR02680" /transl_table=11 BEGIN 1 MNDERPQRFS LSRGGVLNVW QYDDQVFDFG GGRLLLRGTN GAGKSKTLEM LLPFVIDGDK 61 AKITASGRHH TSLLWLMLDG YTGANRTGYL WVEFARPTAD GGSETLTCGI GLRASDSART 121 ATTWYFTSPR RVGVDLHLTD AAGPLSLQRL RAEVETDGHF FDPNATRRYR EHVGQLLFGL 181 PLDQYEDLLR LLYWLRQPQV GEDIDPKRLA EQLVQALPQI DESALRSAGD TFDQLEEFGE 241 QIDRQERAAA AIGSFLQSYR TYARGVVAER AQAVVDAADV ERRARREVRR LERAVAETLD 301 GLDRARAAQH RAESELADAA ARITQLKAGP EARAQAQLLA LDDHLTTRLQ LADQAERRLV 361 EQQQRVSEAQ RRATDAAVDL VAATTEWVSR ARTVRAEGAD AGIVGPLARV AHLAIAEPDW 421 RAPDSVVELR AALAAAPEEL LDVRDRVGVA RAAVKVVDAA RARAEDLRSD AVRREEDSAR 481 AETTLAGRQA RHDEAVTATM DATEQFVAAL TTWLEMTAAV PVPRPEISAA ELGAFGAVVA 541 DAVAPVRAEA EQHRADARTR LAAAEGDQEQ VRAERAEVAA ERDPRPAPPV WRRDDRGALE 601 AIGGAPFWRL VDFRDDIDAP TRAAIEAALE GSGLLDAWVT AEGRVVPEAE DAFLIDVSPE 661 PQEGTGRSLA AVLRADSHLP GAVPSDVVDA VLSRVGLVDD LRSGAAPDDD SLAGGPRADH 721 TLAHVRIGLD GSWWTGPLVG RTNKERAQFI GAAARDAERS RRLAALDGRL DELGRTIAVA 781 GAQVQLHTAT LQSLDAWHRA RPSHEGLLTA WAAEQASATA VDEARAELAA AARLAQAARA 841 AAAVAHDELV RLGQIHDLPI TAQGLHARDE RLRAILDQTR DLDDRRSVLE RDLAEWEERG 901 RFAVAERERL DEAADDDERA RTEAATAAAE LDELRASAGA SVAELEQRLD ELAKTRDRAD 961 AERREQVRQV EQLVRASATL ESEHRTAAHS LGEATPRLGA AREGLVRLER APGVIASATT 1021 EGHVAVEASS AAYDHWTPDE PRAILAALGE GGCSDDTPVI SASQGLLASA AATLEPRLAK 1081 VEDVWVAFGL GEGGELPLVA LELQLSATVR ANRELLSQRE RQIFEEQVLG YLGDALRGVR 1141 LKAEELVAAM NSQLRGVTTS QGIRVRLRWR QRDDIAADAK RAVELLGQPV GALLPSERIE 1201 LRESLHRLID SSRSEAPEES YAEHLSRALD YRRWFAFSVQ YHRPETGEWR DLQRKSALSQ 1261 GEQKVLCYLP LFAAASAHFT SLAGAAPHAP RFVLLDDAFP KIDARTHPLL FGLLVDLDLD 1321 FVVTSERLWG THATVPELAI YEALRSPGER GIAQFEHRWD GQLLTAVGAR GPAASGSAGG 1381 GDG //