LOCUS ADU47609.1 989 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 protein of unknown function DUF1116 protein. ACCESSION CP002343-1047 PROTEIN_ID ADU47609.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_1088" /note="COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR009499; KEGG: nml:Namu_5358 protein of unknown function DUF1116; PFAM: protein of unknown function DUF1116; SPTR: Putative uncharacterized protein; PFAM: CoA binding domain; CoA-ligase; Protein of unknown function (DUF1116)" /transl_table=11 BEGIN 1 MPDQVEIRTG AYVDSVSLMQ VSRTVAAAPG VAAAQVAMAT ELNLAVIMGM GFDVPAAGPN 61 DLVVAIRGDE EAIAAGLAAL DEALAGLRAA GSQAGGFGEA PAPRTLGGVL HRVGANLALV 121 SVPGQHATTE ALDAVEAGVS VMIFSDNVPV EDEVRLKSIA ERRAVLVMGP DCGTAVVGGV 181 ALGFANVVRS GSVGVVAASG TGAQQVMCLL EAAGVGVSHV LGVGGRDLSA AVGGRSTRQA 241 LAALAADPAT ERIVVVSKPP AAEVLSDIES YAAGLGKPVH WATLGAGKPD LTAAVESVLA 301 ALGAEVEWPR WEADQPAATG SSLRGLFVGG TLADEAMLVA GQTLGDIRSN IPLRPDLFLG 361 PELTDAGHVV IDFGDDTLTR GRPHPMIDPS LRLERIAAEA TDPTCGVLLL DLVLGHAAHP 421 DPAPELADTI RVARATAEAS GRTLPVVVSI TGTEDDPQGL TRSALLLRDA GASVLLSNAA 481 ATRQAVRLLG RAPAEPASGT SPAASGIEGT ARHTEPATQL HGLLTADLSL AAAGVPLFAE 541 SVRAQAVPVS EAAWQPPLAG TERDLAVVLA DARRAEANRL AFERMTAAGA DFVDVRPARE 601 ALGLEKGTFL HAGPPITFDR ASGPLKGALI GAMLFEGLAD TPEEAEAALE RGDGITLEPC 661 HHRDAVGPMA GVISPSMWLY ELRDDVHGNR SWCSLNEGLG KVLRYGAYGT EVIDRLHWMN 721 SVLGPLLQQA VRTRVEASGP IDVKAIIAQM LQMGDEGHNR NRAGSLMLLR ELLPTMITAD 781 APSTDIAEAV RFSGANEHFF LNLGMPACKL ATLAAHGIPG SSVVTTMARN GTDFGIRVSG 841 TGDDWFIGPA NTPAGLFLGS YGPEDANPDI GDSAITETAG IGGFAMAAAP AIVRFVGGDV 901 PFALRATQTM YEITVGEHPA YQVPILEFRG TPTAIDVAAV ARTGILPQIN TGMAGRVAGV 961 GQVGAGLVNP PEQCFTAALA ALAAAARIG //