LOCUS ADU47330.1 1221 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 cobaltochelatase CobN subunit protein. ACCESSION CP002343-768 PROTEIN_ID ADU47330.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_0798" /EC_number="6.6.1.2" /note="COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672: IPR011953; KEGG: nml:Namu_0145 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase; PRIAM: Cobaltochelatase; SPTR: Cobaltochelatase; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit" /transl_table=11 BEGIN 1 MTRIVLLSTS DTDLLSARAS GADYVVANPT RPGHTELGDA IHAADVVVAR ILGGPQDLCD 61 GFRRVRDTGA PLVVLGGEQA PNAELMEQST VAPGIVAEAH RYLAQGGPEN LRNLHAFLSD 121 TILLTGDVFD PPAEQPLWGV TQSRMPLGSV ASRRHPRVAI LYYRAHHSAG NVAHVEALAD 181 AVAEAGGIGT PIFVTSLRDA PADLLEHLRG YDVLVTTVLA AGGTRPAAAG AGGDDEGWDV 241 AALAQLDVPI LQGLTLTWSR EQWAASDDGM SPLDVATQVA VPEFDGRIIA TAFSHKEVDA 301 DGLPHYVPDA ERCRRLATLA VNHGRLRHTP VEERRVALVL SAYPTKHSRI GNAVGLDTPV 361 SIIRLLRAMR EQGYDLGVPG EIPGTGPLDP VADEAPDTTA GNALIHALIE AGGQDEDWLT 421 QEQLSGQPVR IPAARYRDFF ATLPAELRDA VTEHWGEAPG ELFVDRHLDA DGEIVAASLR 481 AGNVVVIVQP PRGFGANPIA IYHDPDLPPT HHYLAVYDWL ARDFGAHAIV HMGKHGNLEW 541 LPGKNLALSA ACGPDATIGS IPLVYPFLVN DPGEGSQAKR RAHATIVDHL VPPMARAESY 601 GDIARLEQLL DEYGNVSVMD PAKAPALRAE IWSLLRAAEM HHDLGLEDAA DAPDGDTFDE 661 LVMHVDGWLC EIKDVQIRDG LHILGQAPQG ESLTNLVLAI LRANQVFAGA VGAVPGLRTA 721 LGHDEAALDR DAADRFEGQA SALVTALASA DWQRDAVPAV VCATLGPDVV DSVHEAVCRS 781 LSFACDEVVP RLLGTSGEVD AVLHALDGGY VPAGPSGSPL RGLVNVLPTG RNFYSVDPKA 841 IPSRLAWETG QAMADSLLAR HRADAGEWPR TVGLSVWGTS AMRTSGDDIA EVLALIGVRP 901 RWDEMSRRVV GLDPVPLEEL GHPRIDVAVR ISGFFRDAFP HVIDLLDDAF RLVAGLDESD 961 DDNFVRAHAQ ADLAEHGDER RATTRIFGSK PGSYGAGILP LIESGNWRDD QDLAEVYATW 1021 GGFAYGRELD GVPARGDMER TYRRIDVAAK NVDASEHDIA DSDDYFQYHG GMVATVRALT 1081 GTAPRAYVGD STRPDAIRTR TLAEETARVF RARVVNPRWM AAMRRHGYKG AFELAATVDY 1141 LFGFDATAGV VHDWMYDQLA RTYVTDKENQ DFLRHANPWA LHGMVERFHE AVERGLWAEP 1201 DPELLAELQQ VYLDVEGDLE A //