LOCUS ADU47145.1 696 aa PRT BCT 08-JAN-2015
DEFINITION Intrasporangium calvum DSM 43043 membrane protease FtsH
catalytic subunit protein.
ACCESSION CP002343-583
PROTEIN_ID ADU47145.1
SOURCE Intrasporangium calvum DSM 43043
ORGANISM Intrasporangium calvum DSM 43043
Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae;
Intrasporangium.
REFERENCE 1 (bases 1 to 4024382)
AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S.,
Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S.,
Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.
and Lapidus,A.
TITLE Complete genome sequence of Intrasporangium calvum type strain (7
KIP)
JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010)
PUBMED 21304734
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Intrasporangium calvum DSM 43043
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083316
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Intrasporangium calvum 7KIP, DSM 43043
collection_date :: 1967
lat_lon :: 55.753 37.604
depth :: Missing
alt_elev :: Missing
country :: Russia
environment :: Air
num_replicons :: Missing
ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989,
IMET 7816, JCM 3097, KCC A-0097, NBRC 12989,
NCIB 10167
biotic_relationship :: Free living
trophic_level :: Chemoorganotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02320
Type Strain :: Yes
Greengenes ID :: 90541
Funding Program :: DOE-GEBA 2007
Number of Reads :: 847906 pyrosequencing, 11758818 Illumina
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Air in a school dining room
Isolation Comments :: isolated by L.V. Kalakoutskii
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: Gram+
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Intrasporangium calvum DSM 43043"
/mol_type="genomic DNA"
/strain="DSM 43043"
/isolation_source="air in a school dining room"
/culture_collection="DSM:43043"
/type_material="type strain of Intrasporangium calvum"
/db_xref="taxon:710696"
/country="Russia"
/lat_lon="55.753 N 37.604 E"
/collection_date="1967"
/collected_by="L.V. Kalakoutskii"
protein /locus_tag="Intca_0600"
/EC_number="3.4.24.-"
/EC_number="3.6.4.3"
/note="COGs: COG0465 ATP-dependent Zn protease;
InterProIPR003959: IPR000642: IPR003593: IPR003960: IPR
005936; KEGG: kra:Krad_0538 ATP-dependent metalloprotease
FtsH; PFAM: peptidase M41; AAA ATPase central domain
protein; PRIAM: Microtubule-severing ATPase; SMART: AAA
ATPase; SPTR: Putative cell division protein FtsH;
TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM:
Peptidase family M41; ATPase family associated with
various cellular activities (AAA); TIGRFAM: ATP-dependent
metalloprotease FtsH"
/transl_table=11
BEGIN
1 MDAKRILRTP LVWIMVLISA LVFGMMFSDA GAPRIDTSEA MKQITSGNVE SAKLLNNERM
61 ELTLKQPYTS ADKTVKDAKT VFAFYVEARG DDVVAALNEH LPPKNYTDFI EEPSWIGTLL
121 VSILPIIIIL GLFWFLMGQM QGGGNRVMQF GKSRAKLATK DTPKVTFADV AGCDEAIEEL
181 QEIKEFLQEP SKFLAVGAKI PKGVLLYGQP GTGKTLLARA VAGEAGVPFY SISGSDFVEM
241 FVGVGASRVR DLFEQAKANA PAIVFVDEID AVGRHRGAGL GGGHDEREQT LNQLLVEMDG
301 FDVKTNVILI AATNRPDILD PALLRPGRFD RQIAVEAPDM IGRHRILEVH SQGKPMADDV
361 DLLAVARRTP GFTGADLANV LNEAALLTAR GDRKIIDNRA LDEAIDRVIA GPQKRSRIMS
421 AKERKITAYH EGGHALVAAA LNHTDPVTKV TILPRGRALG YTMVMPVDDK YSTTRNEILD
481 QLSYALGGRV AEEIVFHEPT TGASNDIEKA TGMARKMVTE FGMSERIGAI KLGQSQGEVF
541 LGRDYGHQRD YSEEIAGVVD EEVRKLIEGA HDEAYEAINS NRDVLDRLVL ELLEKETLNQ
601 AEIAKVFHDI VKLPMRPTWL SSQARVPGDR PPVLTPAEAA AQQNGHLAPP VPPDPELEEK
661 IDEAASVGAH PLAEEHPPVA VVEVPDDRPV NPDEKA
//