LOCUS ADR23774.1 352 aa PRT BCT 25-JUL-2016 DEFINITION Marivirga tractuosa DSM 4126 initiator RepB protein protein. ACCESSION CP002350-8 PROTEIN_ID ADR23774.1 SOURCE Marivirga tractuosa DSM 4126 ORGANISM Marivirga tractuosa DSM 4126 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Marivirgaceae; Marivirga. REFERENCE 1 (bases 1 to 4916) AUTHORS Pagani,I., Chertkov,O., Lapidus,A., Lucas,S., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Nolan,M., Saunders,E., Pitluck,S., Held,B., Goodwin,L., Liolios,K., Ovchinikova,G., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Detter,J.C., Han,C., Tapia,R., Ngatchou-Djao,O.D., Rohde,M., Goker,M., Spring,S., Sikorski,J., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and Kyrpides,N.C. TITLE Complete genome sequence of Marivirga tractuosa type strain (H-43T) JOURNAL Stand Genomic Sci 4 (2), 154-162 (2011) PUBMED 21677852 REFERENCE 2 (bases 1 to 4916) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N., Ovchinnikova,G., Chertkov,O., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4085041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Marivirga tractuosa Lewin H43, DSM 4126 collection_date :: Missing lat_lon :: 12.250 109.199 depth :: Missing alt_elev :: Missing country :: Vietnam environment :: Missing num_replicons :: 2 ref_biomaterial :: DSM 4126, ATCC 23168, IFO 15989, NBRC 15989, NCMB 1408 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 5360476 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03940 Type Strain :: Yes Greengenes ID :: 58628 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: IMG/ER 2.8 Isolation Site :: beach sand from Nha Trang Isolation Comments :: isolated by RA Lewin Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454 ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Marivirga tractuosa DSM 4126" /mol_type="genomic DNA" /strain="DSM 4126" /isolation_source="beach sand" /type_material="type strain of Marivirga tractuosa" /db_xref="taxon:643867" /plasmid="pFTRAC01" /geo_loc_name="Viet Nam: Nha Trang" /lat_lon="12.250 N 109.199 E" /collected_by="RA Lewin" protein /locus_tag="Ftrac_3808" /note="InterPro IPR000525; KEGG: cbf:CLI_A0012 RepB family protein; PFAM: initiator RepB protein; SPTR: RepB family protein; PFAM: Initiator Replication protein" /transl_table=11 BEGIN 1 MAHKDKRSPQ ISIPMEYPEK ELKEIAKQHW NITFAKQKKV SVVAKRIMDN VLGQIHDNDL 61 TLKPFYQMHV SEVVNYSDSG SAYDITRKAF TDLASTSWLI QDLEKKYFAP RHLLDTTKTE 121 VKDGFETAYK DGMITIAINP VLEPYFVQVA HYTRYERGQL KNFTSWYSVR IWEILSGFED 181 ILQKGEKWYV SLEELRGWMD CEKKYKNNTK DLLYNIFKEP LIELKGTKLE FDYDKVYAKG 241 VKGRPPIIGL EFYLVNPQGL KPASKILEEW IEKTPEQDRE KKRRCIEKGR EWKISDENLV 301 KCLPIIKEAG AWKLYKQFSE KDNARGTEKK IQDKKAFCNS AMLIAAGLKK PK //