LOCUS ADR19959.1 1127 aa PRT BCT 08-JUN-2015 DEFINITION Calditerrivibrio nitroreducens DSM 19672 protein of unknown function DUF490 protein. ACCESSION CP002347-2042 PROTEIN_ID ADR19959.1 SOURCE Calditerrivibrio nitroreducens DSM 19672 ORGANISM Calditerrivibrio nitroreducens DSM 19672 Bacteria; Deferribacteres; Deferribacterales; Calditerrivibrionaceae. REFERENCE 1 (bases 1 to 2157835) AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Land,M. TITLE Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011) PUBMED 21475587 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens DSM 19672 JOURNAL Unpublished REFERENCE 3 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4087656 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM 19672 collection_date :: Missing lat_lon :: 36.829513 138.217163 depth :: Missing alt_elev :: Missing country :: Japan environment :: Host num_replicons :: 2 ref_biomaterial :: DSM 19672, NBRC 101217 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 18599715 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04007 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Terrestrial hot spring; Japan, Nagano, Yumata Cell Shape :: Vibrio-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 7.0 - 7.5 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454 ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Calditerrivibrio nitroreducens DSM 19672" /mol_type="genomic DNA" /strain="DSM 19672" /isolation_source="terrestrial hot spring" /type_material="type strain of Calditerrivibrio nitroreducens" /db_xref="taxon:768670" /country="Japan: Nagano, Yumata" /lat_lon="36.829514 N 138.217163 E" protein /locus_tag="Calni_2065" /note="InterPro IPR002363: IPR007452; KEGG: ddf:DEFDS_0016 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490)" /transl_table=11 BEGIN 1 MVNEKKGKKY PKLFIGFIFF ISLIAFSINY AIQTNLDYII KNYSPYEISI EKVNKLIFPF 61 YVNIKGVTLE VDKAFFKSDS VVLRFYPIRY LMGKSCFDIE ITDIKADIPD YFWKQPSKKI 121 DLSKLKDLKI SSLYLNTTYN DMKVSLKTNS IFYRYGGEFS IPYLSGDFSK DEIKDRFIGR 181 IKLLYSPQRL KIYQFDLKGD NFFVQALSPI EISEGNKVES SFEGFIGENF VKMLNPKLKG 241 LINFTGSLSN KQLNSKIDCK LTYDNKTLKL KLSMDGIIGD KFKFRSDNVI FDNNKISSEG 301 IFDAKTKKVD LLIKFIDGYK LYEDDSWHPF LNHIRLKDFD SRNGKLELAI TSNEQYIISS 361 DLKKEDERYI LKNLIARSDS FSAKGNGVYD PNSDSIVLDI VGELRNNPDI KHAINNNFQG 421 MIKSNINITK DNIYLKGYYN SDLPQKIYGI ETNYTKGEFD LSLDNISFTN ISTLKTGKIK 481 TNGFIDFNTK NEHYEVITEA VPFFEVMNFF DEKSDISYKI SGKAVVNYSN GDYYGNANIS 541 IDDFKISPNG VKLSFKNSSM EVNEILLEKN RLKSKLLFDF KRDTIDGIIK SEEIKLSGYP 601 SIKNLNLLIK GKPKTPSYKG SATFELKYLE NKPFDITGNI NRLNFTHKSD KLSINGYLDI 661 DNSSLSSQIR LKNFNIDNIS VIGNFRVSSN DLKKFEIRSP DTITIVNRFE DIYINNLSLT 721 ADSSNIIRGD LIASSSDFKD LKVVLFKSDY KKLNGEIDLK DSKLSIKHAN IKKIEGKVRF 781 EYDFNSYPKL DGSVHTIVDV TYPDIRLKLK NIRADGYLSD KKIELSIKSN ELSGKVESNR 841 YYDIKQYNGN LIFKDIFVEK RGFYGVLSGN LHYQGGENLI YGEVFVDKAV FRYAKYEKNN 901 SPTPSLKLPF GYNIKISTTK PVRITEGMLN GYADLNLQMK YEKKLKLSGD IKLTNSYFTV 961 QGTKFLVTNG VMKILNNDTI YVDMEANGTG ALNTTKIYVN GYIPDYRITV YDSKQKGEPF 1021 FSSSRNMGSN NLMSKIINDA IFKDIVNSTN RFFGINTIGI EPNASGGIFK VGRKFNDRVE 1081 VNYTSSIDEN RNSKFSLEYT LFDWFKLTIF SKTDGGTGAG TIFSFDF //