LOCUS ADR19811.1 918 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 multi-sensor
hybrid histidine kinase protein.
ACCESSION CP002347-1894
PROTEIN_ID ADR19811.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_1907"
/note="COGs: COG4191 Signal transduction histidine kinase
regulating C4-dicarboxylate transport system; InterPro
IPR000014: IPR001638: IPR003661: IPR003594: IPR 001789:
IPR005467: IPR004358: IPR013656: IPR013767; KEGG:
ddf:DEFDS_1294 hypothetical protein; PFAM: ATP-binding
region ATPase domain protein; extracellular solute-binding
protein family 3; PAS fold-4 domain protein; PAS fold
domain protein; histidine kinase A domain protein;
response regulator receiver; SMART: ATP-binding region
ATPase domain protein; extracellular solute-binding
protein family 3; PAS domain containing protein; histidine
kinase A domain protein; response regulator receiver;
SPTR: Putative uncharacterized protein; TIGRFAM: PAS
sensor protein; PFAM: Response regulator receiver domain;
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase;
His Kinase A (phosphoacceptor) domain; Bacterial
extracellular solute-binding proteins, family 3; PAS fold;
TIGRFAM: PAS domain S-box"
/transl_table=11
BEGIN
1 MRKIFFLIFL LIYSVSFSQT VKVGVWNNPP LSLTSDNNVT GFIPDIFKKV AKDQNIDFVF
61 VKGGWDELYT MLKNGEIDIF LPIGYSEKRL GEMDFSRYPL FTNWGQIICK KEKYPNSISE
121 LNDKRIAVQK NDLYFIGDFG LLHFLNNFKI KSNILFVDNY IEGFNKILDD QADCALVGKS
181 FILLKKDKDI KPTSIIVQPV EVHFGYSKKL DNQTKNKIDE GIKKLIDDKE SYYYHLLTYL
241 NETGYRYSIS SFYIQKFFLP FIAFIVILFS ALLLFNFLLR KKVVKKTLEL NNTIEKLKNS
301 ESKLKALLNS MPNIIFVINK NFQYVDVITN RDDLLLSPKE KLIGKSIYDF FTGDKLLLFE
361 NHIKDVIEHK HTSNILYDIN IGGNIRYFES FGVPMVLGNE VFGLFQIVER TDLVMANDAY
421 RRAMMELSIE KDKLNRILNS VSEMVIFADL SGQITYTNRS AAEFFGKSII GDSLSELIFE
481 DMEGNRIDFP SCKDSNNISH CKLNSHYLIF NDKKFEIEGE IQPIYDSVSR INGILIVLRD
541 VTNEKRRERE LFKTDKLETI GRIAAGIAHD FNNYLGAIQN YVSFLELNDN NRSIAENIIS
601 IIKKSQNLTK QLLTFSKGGR PVFKITDVGN LVKEVAIFSL RGSNIKEEFE LPDRCFCAEI
661 DEGFLSQVVS NLVINAKEAM GNDGKIKITV SKLFLDKDNE FHLAEGEYIK VSFKDSGPGV
721 PESLKNKIFD PFFTTKSYGT GLGLATSYAI IKQHKGTLSF VNHDDGCEFF FFIPSIDDTE
781 CKKISEDQDS KPTLDKKIKV LYMDDEDILR DSFGLLMEAI GAEVVSVENG EKVLEAVQKE
841 KFDIIVLDLT IKTGMSGKDT IKKLKEMNID SFFVVSSGYS DDPIIHNMKE YGFDEYLPKP
901 FSLKEVKEML ENYRKKHS
//