LOCUS ADR19670.1 813 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 serine/threonine
protein kinase protein.
ACCESSION CP002347-1753
PROTEIN_ID ADR19670.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_1764"
/note="COGs: COG1315 polymerase most protein contain PALM
domain HD hydrolase domain and Zn-ribbon domain; InterPro
IPR000630: IPR005646: IPR000719: IPR002290; KEGG:
ddf:DEFDS_1136 hypothetical protein; PFAM: protein of
unknown function DUF342; SMART: serine/threonine protein
kinase; SPTR: Putative uncharacterized protein; PFAM:
Protein kinase domain; Protein of unknown function
(DUF342)"
/transl_table=11
BEGIN
1 MDSQFLSRYD LKDFLLSLPS GDLYKAIDIK FKRNVLIKIV DLSNIKEISD IENVKNRFNR
61 YVNNALKLIH PNIVNILDYH IDESNKCYTV TEFFNINESI FSKEMLFDMS FNTKLKIATS
121 LVEAMEFAHS IKILHQNLYI DSIFFAGDNI KIDNFDLKRY LAKNSLISEL GIYSNPPPYI
181 PPEYISSYEP SVYGDIFQIG CILYFIFCRE HPFGDTINDE AILRIKNLDY IDPTYYSDVE
241 IDIAKIINRA MMKKPSERFE TVNQFFIELK KIIEKLKDKK YDISTYRFFI QNNRMFIQTN
301 PTASIDISEL ENRLLNENIY NYDLERIQEA IHISNGDPIE IGEIFKKIDS VIFNCFDISV
361 SDDQMECYLK KLTPKKLDPK EILFYLKKKN IRYGYIKENI NELAEDAEGS IRLVARGTEP
421 IRGEDAYLVF FFEPENKYKP KEDEEGNVDF RNISVIQQVD KGDPLVIKVP ATKGIDGYNV
481 FGNIIKATPG NDVKLPTGKN VYLSSDGLKI LSTTDGIVNY DNGKVNVIEM IIIDGDVNFS
541 TGNINYKGDV LIRGDVLPDF KVFAGGDIKI RGVVEGAFIE SERGSITISS GIFGKNQTKI
601 KALKNIKADF VQDAELLAGE TVEIANYTRN SKVFCKSFLS YKGMGAVQSS LIEATRLIDI
661 NIAGAKNYTK TTLYINQLNK NNLKLQIQDI MEKLDTISKS INQVKLQIKK IIVSSGSMEN
721 AILDTEYKAC VEKLKKLDNL NLVLQEKLQS LQDDMNFILS EQKEMIIIRR YLYSDVKIRI
781 GSALKITKEE YETRVVITKD ENDELIFGSA ISK
//