LOCUS ADR19483.1 845 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 binding-protein-
dependent transport systems inner membrane component protein.
ACCESSION CP002347-1566
PROTEIN_ID ADR19483.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_1575"
/note="COGs: COG4590 ABC-type uncharacterized transport
system permease component; InterPro IPR000515; KEGG:
nhl:Nhal_2290 binding-protein-dependent transport systems
inner membrane component; PFAM: binding-protein-dependent
transport systems inner membrane component; SPTR: ABC
transporter, inner membrane subunit; PFAM:
Binding-protein-dependent transport system inner membrane
component"
/transl_table=11
BEGIN
1 MMEKNLRRKL ADKIARYLIT VGGIGTILAV LLVFLFLLWT TIPLFKSGEV SQNSLAKSDL
61 SDVRHGIVDE YGLIAAVFDG EAFEIVSLPT GDIMDKISLN FKMTSFGYNE KKNSYIFAIE
121 DGRIVEVDFE FKKDNINQGL AEGKARYSIK DGKLIEKIGE LENSYYAEIT TKDLIKIPNG
181 KKVIVIDEIR NDNDNFIVYL TDDKVLHLNE VKKKENILTG EISTQVNESN IDLKTVINAT
241 NPDYLKINSS KTMVMIFFKD GRYLSIDTKN FESPKILENK KLFSDGREIT YLDFLIGRNT
301 ILIGDNKGYV TAWWPTEDRL NKNNLIFSQI YSYYSGDETP VVFISPSKRD KSFVILNKKN
361 RISMYHMTSG KHLVDIITNL NNAKIAILNQ KNNKIAIFGN KGDKIETYDL KIPHPEITFR
421 SVFGKIQYEL TSKPEYVWQS SSGSDDFEPK FSLIPLIFGT IKATIVAMLF AIPVAIMAAI
481 YTSEFASKKI RSSIKSTIEI MASLPSVVLG FIAALIVSPF VENVVLATLF SFIMVPFSLI
541 FMGHLVQLLP KELLNSMDKY RVWIILLVAL PLGLYLGVKI SVIVEKLLFY GDFKYWLHNY
601 NYSPLGGWAL ILLPLGIGVT IYLYRRFFYD FYESLLDNRS YHQAGVIELV KFFVLTVCSV
661 IITFFIAFLI TKAGIDLRYD LPIIESIMNT YVQRNALVVG FIMGFAVIPI IYTVSEDALN
721 AVPEHLRSAS LAAGATQWQT VINIILPVAM SGIFSAIMIG FGRAIGETMI VLMAAGNTPI
781 IDMNIFSGFR TLSANIAVEL PEAVINSTHY RILYLAALVL FLMTFVINTF AELIRIKYRK
841 KSSQL
//