LOCUS ADR19455.1 1101 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 multi-sensor
hybrid histidine kinase protein.
ACCESSION CP002347-1538
PROTEIN_ID ADR19455.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_1547"
/note="COGs: COG0642 Signal transduction histidine kinase;
InterPro IPR013767: IPR003661: IPR003594: IPR001789: IPR
008207: IPR005467: IPR000014: IPR004358; KEGG:
chu:CHU_2895 PAS/PAC sensor hybrid histidine kinase; PFAM:
ATP-binding region ATPase domain protein; histidine kinase
A domain protein; PAS fold domain protein; response
regulator receiver; Hpt domain protein; SMART: ATP-binding
region ATPase domain protein; histidine kinase A domain
protein; PAS domain containing protein; response regulator
receiver; SPTR: Sensory box histidine kinase/response
regulator; TIGRFAM: PAS sensor protein; PFAM: Histidine
kinase-, DNA gyrase B-, and HSP90-like ATPase; Response
regulator receiver domain; His Kinase A (phosphoacceptor)
domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box"
/transl_table=11
BEGIN
1 MNKIRKRTLT FIVSFLILFT PLSVMLFYNH KRTVEIFFNN NVHLQEVVWR SVTIAHNNAA
61 DSYFETYVMN TDVLQILKEY KNADPKKRDL LRLKLYRLLY PKYEILKKKG VRQFHFHTTN
121 AESILRMHAP DKFGDSLKIE RPDVWLANKN LQIVRTFESG KVVSGFRNVY PIIWTDEHLG
181 SVEVSFSFES LRQMLADLFE NREFIALIKK DNLNKLFDEQ KGLYKEFIPG WLEEDPDREL
241 YDTLKAIPAE YRKALEFARK DKDFIKLLNQ KSSGGTYFKY KGKNYLILKT VIFDTYQTPT
301 ALIISISKSE ELDNILKKFR LDFLSLVSLI FLLSTLITIL SGKNEKVLER EQFIENILST
361 IHTGLYIINQ DGNTIRINES LTRILGYTEE DLLGKSAHDI FHLHHQDKNN CPIFKVITTN
421 REYEGTEIFK SKNGDFLHVT VKSKRFEFQG EHYALVTFID ISELVERENE LNKTNFILNT
481 IIENFNDAVM LTDDKTIVQI NDKMIKDFCV PLDLLPEGID KVFAFISLNF KNQSEFMNFA
541 YSDKENTILD TVDEKHIEIR KVPIKSFKFS GILWIFSDRT ETISNMKKMA MLKEKAEEAN
601 KAKSLFLSSM SHEIRTPING IIGAIELIPK HNLSDEISSY LNIIKSSSEH LLMLINDILD
661 LSKIESGYLK LENIPFEPIK VLKRVRSIIY PTTIPKGLTF SIDYPDRGIC VYGDPHRLSQ
721 VLINLSGNAV KFTEKGEVEV KMEILSESET EIRLKFSVRD TGIGIPEDKM DKLFKPFSQI
781 DDSHTRKFGG TGLGLVISQN LVKMFGGIIK VESKVGEGSI FSFEIDFKKA EFKRCEDSEE
841 VYNSMGENID IGHLKVLLVE DNKVNSIIAT NLLKKLGITD IDTAYDGLEA IEKVKTKRYD
901 LIFMDMSMPE MDGVTATKII RTDPEVIDNN TPIIAMTANA FEEDKQLCIS AGMNDFVTKP
961 ISIDSVKKSI FSVFHIYKNT DDIVKDTIDE DLFDAQRLKN SINDTESIKQ LLEIYIEDTE
1021 KSINELKRLK KSNEYEKISR IAHKIKGSSY NVGADRVGDI AKEIDISSKT GKYERIEQLI
1081 ETLESEFEKL KVYLKKGNYI V
//