LOCUS ADR19368.1 786 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 type II and III
secretion system protein protein.
ACCESSION CP002347-1451
PROTEIN_ID ADR19368.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_1460"
/note="COGs: COG1450 Type II secretory pathway component
PulD; InterPro IPR001775: IPR011662: IPR005644: IPR004846;
KEGG: ddf:DEFDS_1724 hypothetical protein; PFAM: type II
and III secretion system protein; NolW domain protein;
Secretin/TonB short domain; SPTR: Putative uncharacterized
protein; PFAM: Bacterial type II/III secretion system
short domain; Bacterial type II and III secretion system
protein; TIGRFAM: type IV pilus secretin (or competence
protein) PilQ"
/transl_table=11
BEGIN
1 MKKIFLYILI AVLMIFGCAE KKSVLLDDNK NAVGRSLIKG LDIKKDDKKY EMIIKVNDPK
61 DISVYYGKNP YSLTIMLPEA DVDADAMKFT FKDDLVERFS ILPKQDKVII TITLKDDVDY
121 SYSTNNDGVI VKFKVDKADV KSVLKSSNWL ENVEILNVKP ATFISELENL SNNSEVYLTL
181 VSDGTVKIDY GFINADNIYV DFYDVKMLGD KTVYQGMGIV KEIKVVTSLF PQKVRLILAV
241 DKPVDVNVGF KEGKFIITSN NEKLTGSVVF INKIDSRVVG KVQGISLSSG GKLKYEKKVI
301 DGNLVLVFDE RVRFAREVSP INFFDGTPIK YVKVGKVMGK PAVVFVPNGD VYSKVEDDKG
361 AVIVYSSSEQ FTKTVDTKKD VGAKGKVEAS ELISLSIKDM DVKEAIKLIY YGRNKNIIFG
421 KEVQGKTSIF VKDVHYKTAL AAIYRENSLV EVEEDNVVWV ISKSRQDEIL AEKNKLMKLA
481 EEEKKTEPLF TEIIPVNYYK ASDFDAVVKG VLSPRGKVQV ESKSNSFVVT DTKDSIAKVK
541 NVLKEVDKPT PQVTIEARVV EVSDSNDLAY GIKWGANTKI NRTSINFPNS IGINGDAGGY
601 MVNLPIGAPT GALALTLGNI SNTFNIDMAI SAMESRNKAK TISSPKITTL DNQEAEIKSG
661 GKAIIVPSGD NTQSQTIDVG IKLKVKPHIT ANNMIFMEIE VEKSSLGAVS GTNAETLEKK
721 AKTQVLLANG ETTVIGGIYE DEQNEIKNEV PGLSKIPLLG WLFRNNIERR AKKELLVFIT
781 PRIQNK
//