LOCUS ADR19219.1 874 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 valyl-tRNA synthetase
protein.
ACCESSION CP002347-1302
PROTEIN_ID ADR19219.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_1311"
/EC_number="6.1.1.9"
/note="COGs: COG0525 Valyl-tRNA synthetase; InterPro
IPR001412: IPR019754: IPR002300: IPR013155: IPR 019499:
IPR002303; KEGG: ddf:DEFDS_0507 valyl-tRNA synthetase;
PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase
valyl/leucyl anticodon-binding; Valyl-tRNA synthetase,
class Ia, tRNA binding arm; SPTR: Valyl-tRNA synthetase;
TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases
class I (I, L, M and V); Anticodon-binding domain; Valyl
tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA
synthetase"
/transl_table=11
BEGIN
1 MDYSSLPTRI SPEEFESSIY REWEEKKYFH ADENSQKPSY SIVIPPPNVT GSLHMGHALN
61 NTLQDILIRY HKLIGFETMW IPGTDHAGIA TQNVVEKMLH SEGLTRHDLG REKFIERVWK
121 WKEESGGTII RQLKRLGSAC DWDRERFTMD EGLSRAVRIV FVTLYKEGLI YRSNYIVNWC
181 PRCHTALSDL EVEHEEKEGA IYEIKYPIKG DDRYIVIGTT RPETMLGDTA IAVHPDDERY
241 KDLVGKIAVL PILNREIPII ADEYVSMDFG TGALKVTPAH DPNDFLLGKK HNLPEINIFD
301 ENGIINENGG KYKGFDRFEA RKLIVEELKN LGLLENIHKH IHKVGGCYRC KTVVEPRISM
361 QWFVKIKPLA EEAIKAVENG SIKIFPQNWE KTYYEWMYNI RDWCISRQIW WGHRIPVWYC
421 NECGHLTVDI EDPDSCEKCG SKNIIQDNDV LDTWFSSALW PFSTMGWPEK NKTIEKFYPT
481 SCLVTGFDIL FFWVARMIMM GQKFMKKEPF KHVYIHALVR DQYGQKMSKS KGNVIDPLVI
541 IDKYGADSFR FTLASLAAQG RDIKLSEDRI EGYRNFVNKI WNASRFILMN LGGYKPKDPV
601 LEKLNKEDKW ILSMLKDTAD DVAKAIESYN FNEAALKIYH FFWLNFCDWY IEFIKIRIFK
661 NENKDEALDT AVYVLKKSLI ILHPFMPFVT EYIYKLIGEK ESIMLENYPK GLPDYEADRR
721 DVERIIDFIS LVRTIRGEYN ISPAVKIKVF YKTDDKEVMK LISDNLNLIS TLAKTESIEE
781 TKENIKNSAV NVSRDFTVYV PLEGLVDIEA EIKKLEKEKQ SLEKDFNIYN GKLNNEGYLS
841 KAREDVIAKD REKLADIVAR LEKVNESIKR FKGI
//