LOCUS ADR19208.1 1043 aa PRT BCT 08-JUN-2015 DEFINITION Calditerrivibrio nitroreducens DSM 19672 translation initiation factor IF-2 protein. ACCESSION CP002347-1291 PROTEIN_ID ADR19208.1 SOURCE Calditerrivibrio nitroreducens DSM 19672 ORGANISM Calditerrivibrio nitroreducens DSM 19672 Bacteria; Deferribacteres; Deferribacterales; Calditerrivibrionaceae. REFERENCE 1 (bases 1 to 2157835) AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Land,M. TITLE Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011) PUBMED 21475587 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens DSM 19672 JOURNAL Unpublished REFERENCE 3 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4087656 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM 19672 collection_date :: Missing lat_lon :: 36.829513 138.217163 depth :: Missing alt_elev :: Missing country :: Japan environment :: Host num_replicons :: 2 ref_biomaterial :: DSM 19672, NBRC 101217 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 18599715 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04007 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Terrestrial hot spring; Japan, Nagano, Yumata Cell Shape :: Vibrio-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 7.0 - 7.5 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454 ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Calditerrivibrio nitroreducens DSM 19672" /mol_type="genomic DNA" /strain="DSM 19672" /isolation_source="terrestrial hot spring" /type_material="type strain of Calditerrivibrio nitroreducens" /db_xref="taxon:768670" /country="Japan: Nagano, Yumata" /lat_lon="36.829514 N 138.217163 E" protein /locus_tag="Calni_1300" /note="COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterPro IPR006847: IPR000795: IPR004161: IPR000178: IPR 005225; KEGG: ddf:DEFDS_1525 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; SPTR: Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2" /transl_table=11 BEGIN 1 MNRFRISELV RKGLGKFDEI SEKLKSVGVA ISSENDEVTE EQLASAGFDI KRISLDKRQE 61 LIKQAMDRRK RHSKVTEVIV KDQKSVMDDT KKKLTKEELL KKKLELEKSL QKVDEEREKL 121 RDEKLKAETK KDDTVSSNVP DEVETSKNSD IILENKSIDV QVSENDQETI NKSDEVQAPS 181 EDEKGIDKKS EKISDEVLVQ KEEIVIKTDE SQVVKQKSEE PKTHKKEEHH KKPYQGKKPW 241 EKRPHQDRKD ASSPQGQQRE DQGRQQNRPD NRSEARKGDH QRGGRPPYQG QQRDGGSYRD 301 RPSGGRPQGD RPQGGRPQGD RAGFDKGKRT DFKKEETSSK DKSIFSPMSD VLIEDKELIV 361 KKKKWEEDVP SPIVEEKDIE SKKIKVKKSS SKKEKNLKQN LLEDLELLQI ETGVIEPEPT 421 IDELEEIDQK PKKQAKLKDR DREKEKEVVK EVKQPSKPTR ITIGESITVS DLAGLLGIRI 481 PDIIKKLMTI GIMATANQSI DAETVQLIAM DYGIDVEVKT ISEEDLLPNY ESKPENLKPR 541 PPIVTVMGHV DHGKTSLLDA IRKTKVAEKE AGGITQHIGA YEVDIDRGKI VFLDTPGHEA 601 FTTLRARGAN VTDIVILVVA ADDGVMPQTK EAIDHAKAAG VKIVVAINKI DKPNANPERV 661 KTQLAEYGII PEEWGGEYQF QEISAKNRIN IDDLLERVLL EAELLELKGD YVKPAEGIII 721 ESRLDKQKGV SVTLIVKDGV LKVGDIFVAG THYGKVRALY NYAGRSIKEA GPSIPVELMG 781 FSEVPEPGET LIVLPNEKLA KQIVEIRLQK QREKDEAARA KLSLDDIFNK IKEGEIKDLN 841 IILKADVQGS LEALKSSLAK LSNSEVKVKI IHDGVGGINE SDVLLALASK AIIIGFNVRP 901 DAKARTVAER EKIDIRLYSV IYEAIEEVQK AIEGMLKPEL KENIIGKVEI RKVFNVPKVG 961 KVAGCYVLEG KIVRNSNVRI IRDNIVIYTG KINSLKRFQD DVKEVVAGYE CGLGIANYND 1021 IKEGDILEVF EIVEEKRLLK DVE //