LOCUS ADR19120.1 761 aa PRT BCT 08-JUN-2015 DEFINITION Calditerrivibrio nitroreducens DSM 19672 DNA mismatch repair protein MutS domain protein protein. ACCESSION CP002347-1203 PROTEIN_ID ADR19120.1 SOURCE Calditerrivibrio nitroreducens DSM 19672 ORGANISM Calditerrivibrio nitroreducens DSM 19672 Bacteria; Deferribacteres; Deferribacterales; Calditerrivibrionaceae. REFERENCE 1 (bases 1 to 2157835) AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Land,M. TITLE Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011) PUBMED 21475587 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens DSM 19672 JOURNAL Unpublished REFERENCE 3 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4087656 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM 19672 collection_date :: Missing lat_lon :: 36.829513 138.217163 depth :: Missing alt_elev :: Missing country :: Japan environment :: Host num_replicons :: 2 ref_biomaterial :: DSM 19672, NBRC 101217 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 18599715 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04007 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Terrestrial hot spring; Japan, Nagano, Yumata Cell Shape :: Vibrio-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 7.0 - 7.5 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454 ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Calditerrivibrio nitroreducens DSM 19672" /mol_type="genomic DNA" /strain="DSM 19672" /isolation_source="terrestrial hot spring" /type_material="type strain of Calditerrivibrio nitroreducens" /db_xref="taxon:768670" /country="Japan: Nagano, Yumata" /lat_lon="36.829514 N 138.217163 E" protein /locus_tag="Calni_1212" /note="COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR002625: IPR000432: IPR005747: IPR007696; KEGG: ddf:DEFDS_1585 DNA mismatch repair protein MutS2; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2; SPTR: DNA mismatch repair protein MutS2; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein" /transl_table=11 BEGIN 1 MIDSSFQQID FLQFKEHLKK HSISQFSSDF IDELTPFNST SKIIEEQNQI REALDLFGDF 61 GGELPDSRNY YQFYKKLLDP YSSWLVVDFI VFAEFHKKLG EFKKSVFGDF DVNHLKTLFS 121 NIYVLPDIVD DIFSKITNDG HVKDDASDRL REIRKEKKNV KEKIYETLNS LINGKDSEKF 181 VQERVIKEYS NRLMLLLRPN FRQFINGIVH SISGTGMTLY VEPSNVVEMN NRYQELISLE 241 EIEVNRILQK LLDCIKSKSY EITETVNSMK KLYYFHAIFS YVGERDYVFP NFSNKIYVEK 301 LHHPLIYDLK KEKSVPIDFE MTEDVNVAII TGPNAGGKTA ALKSIGINTV LGRCGLPLFA 361 RCAELINFDK IFTDIGDQQS LVMDLSTFTS HMVNIKHIVD NSDGGSLVLL DELGTGTEPK 421 EGEALAISII EYLMDRGSRV IVTTHFSGVR NMAYRYKGVV LYGVDFDYEN FEPKFRLIKG 481 LAGRSDPLII AGKLHFNESI ISRAKKILEE YSSLEILSAD ELNRLKLDIE KERYTLEELK 541 RSLEIKESEL LVKENELKKK LNAKEEQILS DALSILNKVK SLKVRSNNNK EVDEIKSNIV 601 KRMESLDIGD HIPDVKVGDM VKLSKYGKVA KILEISKNKA YVDMEGMKFT IELDKIRGEK 661 LSVNQKKVDK EISVSAVVER SPRYEIVLVG KTVDEAWDEL DKFLDKAILS GWNRVFVIHG 721 RGSGALRKGL HNILKSDQRV KNFRIADIKE GGDAITIVEL L //