LOCUS ADR19047.1 866 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 ATP-dependent
chaperone ClpB protein.
ACCESSION CP002347-1130
PROTEIN_ID ADR19047.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_1136"
/note="COGs: COG0542 ATPase with chaperone activity
ATP-binding subunit; InterPro IPR017730: IPR003593:
IPR001270: IPR004176: IPR 003959: IPR013093: IPR019489:
IPR018368; KEGG: ddf:DEFDS_1925 ATP-dependent Clp protease
ATP-binding subunit ClpB; PFAM: ATPase AAA-2 domain
protein; AAA ATPase central domain protein; Clp domain
protein; Clp ATPase-like; SMART: AAA ATPase; SPTR:
ATP-dependent Clp protease, ATP-binding subunit ClpB;
TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA domain
(Cdc48 subfamily); C-terminal, D2-small domain, of ClpB
protein; Clp amino terminal domain; ATPase family
associated with various cellular activities (AAA);
TIGRFAM: ATP-dependent chaperone ClpB"
/transl_table=11
BEGIN
1 MINWNKLTIK ASEAIQNVHA FAEKNGNQQI EQEHLLKALI LQDEGFVKPL FQKIGVNLPG
61 LINDIDELIS KYPKVSGSEG VYISSDLKKS LDYAFKIISN FGDEFVSTEH LILGIIEHAN
121 YSLRQVFLKH GIDKNKAEKA IKELRGASKV TDQNPEDKMQ ALEKYTINLT EKARNGKLDP
181 VIGRDEEIRR VMHVLSRRTK NNPVLIGEPG VGKTAIVEGL AQRIVNGDVP ETLKDKTILA
241 LDLGALIAGT KYRGEFEDRL KSILNEIRQK EGEIILFIDE MHTLVGAGAA EGAMDAANLL
301 KPALARGELH CIGATTLDEY KKHIEKDAAL ERRFQPIIVD EPSVEDVISI LRGLKEKYEV
361 HHGVRIKDSA IVAAAYLSHK YISDRHMPDK AIDLVDEACA KLRMEIDSMP TELDELERKK
421 RQLEIERQAL KREQDEVSKV KLEKIEKEIN DLSEKIIALK THWQNEKNII VEIKKVKEEI
481 EDQKNAMLNA ERSGNYELAS QIKYGKLVEL NRKIEELNNK LKEIQKDKKM LKEEVDEEDI
541 AEIIAKWTGI PVTKLLEEEA EKLIKMEENL HKRVIGQDKA ISSISEAIRR SRAGLSNPKR
601 PIGSFIFLGP TGVGKTELAK ALAEFLFDSE DALIRIDMSE YMEKHSVAKL IGAPPGYVGY
661 DEGGQLTEKV RRRPYSVILF DEIEKAHPDV FNIMLQILDD GRLTDSKGRV VSFKNTVIIM
721 TSNIGSELIQ TEFEKGGSWE EEYDRISKLV FNIISQYFKP EFLNRVDDII VFHPLSKDHL
781 SKIAILLLDE LKKRLMANIE VDMEYDATVV EELIKAGYDP KFGARPMKRA LQKLIENRIA
841 EEIIKGNIKK NSKIAISFKN GNLTIS
//