LOCUS ADR18934.1 1095 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 multi-sensor
hybrid histidine kinase protein.
ACCESSION CP002347-1017
PROTEIN_ID ADR18934.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_1023"
/note="COGs: COG0642 Signal transduction histidine kinase;
InterPro IPR000014: IPR001610: IPR003661: IPR003594: IPR
001789: IPR005467: IPR000700: IPR008207: IPR004358:
IPR013655; KEGG: sbl:Sbal_3505 multi-sensor hybrid
histidine kinase; PFAM: ATP-binding region ATPase domain
protein; PAS fold-3 domain protein; histidine kinase A
domain protein; response regulator receiver; SMART:
response regulator receiver; ATP-binding region ATPase
domain protein; histidine kinase A domain protein; PAC
repeat-containing protein; PAS domain containing protein;
SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS
sensor protein; PFAM: Histidine kinase-, DNA gyrase B-,
and HSP90-like ATPase; Response regulator receiver domain;
His Kinase A (phosphoacceptor) domain; Hpt domain; PAS
fold; TIGRFAM: PAS domain S-box"
/transl_table=11
BEGIN
1 MIDKINISID EIWAALESGD IGIWFWDNST GKVLWSDHAY KMLGYYPNEF EMSYEKWVEL
61 LHPEDVEYAQ LSVAKQLEFK NSFSVDFRLR AKDGSYKWIR GSGKVIRYAD DGSMLYLTGT
121 HTDITEKKNA EILLQEKLYI LEEAEKIAKL GSWDLDIKNN KLFWSNEIYN IFEIDKDEFG
181 ASYDAFISLV HPDDRKKIDD VYWESVRSKK SYQVEHRLLM PDGRIKYVIE RGKTFYDKDG
241 DPIRSIGTVQ DITEKVLLER SVKEQEIVFK SIFERAPVGI IFTDILGNII LVNNYLAELL
301 DYEHEDFKNK NISEITFAED YKKEQIFIQG LLNNEIDYYR IEKRYIKRDG SLNWVDSSRT
361 SLKDEDGNIK NFISVVLNIN DKKVAEQELI KAKENAERAN QAKSTFLANM SHEIRTPLNG
421 IIGIAQLLKN ENLPKHVVEY VKHLNMASHH LLDLINDIFD FSRIESGEMK IINDIFSLKD
481 TINEVVKVLY YRAKEKNIEL TVFVDPLIPS KIIGDSLRVK QILTNLLGNA IKFTEVGYVS
541 LDVFIKNSTE KSVDILFVIK DTGIGISGDK KQKLFTPFFQ GDQSVTKKYG GTGLGLTIVK
601 RLIDAMNGDI NFISEPGKGT TFYVTLKFGI YESSGLIYNE KMTNLNVLFI SDLSVSSQNI
661 YKILESLKFK VTVFDETFSF ENSKIDIVIA VHSIKNEEII NKILKLFDSG KAIIITNLNK
721 PEAQKIFSKK PFIMEKPVLP SDIFNAVTKI LFKEDIVTKE KYLTSCDSKI QDIHALIVED
781 NAINQIVLQN MLKQFNISSD FANDGLEAVN LAKKKKYDIV FMDIQMPNMD GYEATRQLRK
841 IPEYTDVPII AVSAHAFKTD ADKSLEAGMN DHLTKPVSIN DLFKALSKWI NVKCTFSNEP
901 KTYSASQIPF LDLQDLKMRG NEPGNIKFLV NLFIEELNRD IPIIKQYIKE NEIENLQKII
961 HKHKGASGNI SLVDIHKNLV EIDKLLKAKT EPKMIKNLFD KFFDQIDILN SYKETLEGAR
1021 KEIVSFKKIS KDDIDELKKL LLDNNLKAIE KFEDMKYGLS SMDGLLTNKL GIAILNLNFT
1081 EALMILEELN KKGIL
//