LOCUS ADR18917.1 1077 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 carbamoyl-phosphate
synthase large subunit protein.
ACCESSION CP002347-1000
PROTEIN_ID ADR18917.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_1006"
/note="COGs: COG0458 Carbamoylphosphate synthase large
subunit (split gene in MJ); InterPro IPR006275: IPR011761:
IPR005483: IPR005481: IPR 005479: IPR005480: IPR011607;
KEGG: ddf:DEFDS_1217 carbamoylphosphate synthase large
subunit; PFAM: Carbamoyl-phosphate synthase L chain
ATP-binding; Carbamoyl-phosphate synthetase large chain
domain protein; Carbamoyl-phosphate synthetase large chain
oligomerisation; MGS domain protein; SPTR:
Carbamoylphosphate synthase, large subunit; TIGRFAM:
carbamoyl-phosphate synthase, large subunit; PFAM:
Carbamoyl-phosphate synthase L chain, ATP binding domain;
MGS-like domain; Carbamoyl-phosphate synthetase large
chain, oligomerisation domain; Carbamoyl-phosphate
synthase L chain, N-terminal domain; TIGRFAM:
carbamoyl-phosphate synthase, large subunit"
/transl_table=11
BEGIN
1 MPKRTDIDKI MIIGSGPIVI GQACEFDYSG TQALKALKEE GYKVVLINSN PATIMTDPEF
61 ADATYIEPLT VECAEKIIEK ERPDAILPTV GGQTALNLAL DLHKHGVLDR YNVELIGAKV
121 DAIKKAEDRE LFKAAMYKIG LEMPKSAYVK SFEEGMDAIV NIGFPAIIRP SFTLGGTGGN
181 VAYNMEEYKR YLEWGLEASP VGEVLVEESI LGWKEYELEV MRDLKDNVVI ICSIENFDPM
241 GVHTGDSITV APAQTLTDKE YQYMRDAAIK IMREIGVDTG GSNVQFATDP KTGRQVVIEM
301 NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDEIPNDIT KKTPASFEPT IDYCVVKFPR
361 FTFEKFPGTD DTLTTQMKSV GEVMAIGRTF KESLQKAINS LEIGKTGFDE IFDKNDYDKP
421 EVIDEIISYL KRPTDKRMWY IGEAFRAGMS IDEIYNYSCI DRWFLNNIKQ IIDMEEEIKR
481 KKIDTLTPEE LRKYKEYGFS DKRLAKLMNC TEDDIAFKRR SLDVIPVYKR VDTCAAEFES
541 FTPYLYSTYE KECEAGVTER KKVVILGGGP NRIGQGIEFD YCCVHACYAL SEIGYETIMI
601 NCNPETVSTD YDTSDRLYFE PLTKEHVLNI IDKEKPVGVI VQFGGQTPLK LSVPLEKAGV
661 RILGTSPDSI DIAEDRERFK KLVEKLGILQ PNNGIARNPE EAFKIAEEIG YPVVVRPSYV
721 LGGRAMEIVY DSEALANYMK FAVEASEKHP VLIDKFLDNA IELDVDAISD GETVVVAGIM
781 QHIEEAGIHS GDSACSIPPR TISEDIKIKV IKITKQLAYE LKVLGLMNIQ FAIKDNDIYI
841 LEVNPRASRT VPFVSKTIGV PLAKLAAKVM VGQKLKDLGF TNEVDIPFFT VKEAVFPFVK
901 FPGTDPILGP EMKSTGEVMG IDVTFGKAYY KAQMAAGNKL PKSGKVFISV KDSVKKDIIP
961 IAKEFDRLGF NIVATAGTYN LLKENGINVE FVKKVQDGRP NIVDLIKNRE IKFVINIPHG
1021 KKSRLDSTSI RRAILSYNVP YVTTIEAAEA SILGIKDYFN ENLNVTSLQN YYNHLRR
//