LOCUS ADR18878.1 885 aa PRT BCT 08-JUN-2015 DEFINITION Calditerrivibrio nitroreducens DSM 19672 Polynucleotide adenylyltransferase region protein. ACCESSION CP002347-961 PROTEIN_ID ADR18878.1 SOURCE Calditerrivibrio nitroreducens DSM 19672 ORGANISM Calditerrivibrio nitroreducens DSM 19672 Bacteria; Deferribacteres; Deferribacterales; Calditerrivibrionaceae. REFERENCE 1 (bases 1 to 2157835) AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Land,M. TITLE Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011) PUBMED 21475587 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens DSM 19672 JOURNAL Unpublished REFERENCE 3 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4087656 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM 19672 collection_date :: Missing lat_lon :: 36.829513 138.217163 depth :: Missing alt_elev :: Missing country :: Japan environment :: Host num_replicons :: 2 ref_biomaterial :: DSM 19672, NBRC 101217 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 18599715 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04007 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Terrestrial hot spring; Japan, Nagano, Yumata Cell Shape :: Vibrio-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 7.0 - 7.5 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454 ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Calditerrivibrio nitroreducens DSM 19672" /mol_type="genomic DNA" /strain="DSM 19672" /isolation_source="terrestrial hot spring" /type_material="type strain of Calditerrivibrio nitroreducens" /db_xref="taxon:768670" /country="Japan: Nagano, Yumata" /lat_lon="36.829514 N 138.217163 E" protein /locus_tag="Calni_0967" /note="COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR000644: IPR001667: IPR003156: IPR002646; KEGG: ddf:DEFDS_1077 polyA polymerase family protein; PFAM: Polynucleotide adenylyltransferase region; CBS domain containing protein; phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SMART: CBS domain containing protein; SPTR: PolyA polymerase family protein; PFAM: DHH family; CBS domain; Poly A polymerase head domain" /transl_table=11 BEGIN 1 MKIVITHHNP DFDAFSSAYA ALKLYNCDKI FISNTVESNV GRFLEENDFG IPYIKATERF 61 IDELKESIDL LIITDCKMKS RLKYLSKLID KSNKIIIYDH HQTDNIDIDT DEIYLEKIGA 121 STSIIVKRLK ENGVYLSKEE ATLLMMGIYE DTGFLSFNTT TPNDLLAAAY LLEHGADLNL 181 VSEYVKRELS KEQVLLLNEL IINTTVLIID KLFIGITHAN TDEFFGDIAF LAHKLIEMEN 241 FDAIFLLVRT GDRVVIVGRS RSDKIDISRI LYYFGGGGHP YAGSAIVKDI TLNEAIPKLK 301 NIINEQIYPM KYARDLMTSP VKYVSTGEKI ADAFDLFMKY NLNVMPVVKN GKTVGLILRR 361 DILHSIKHEL QNEPVDSIMQ IEFDTASPDT PIDEIKDIML LKNQKMVPIE INGTLVGVIT 421 RTDLLRLMRE EIVKMPRFVN EKAEVAGFFK SRNVADLLKD RLPEYYYNLL KQIGTIADEL 481 ELNAYVVGGF VRDLLMKYEN FDVDIVVEID ATILAKEFAR RNNGRVAIHD KFKTAVVILP 541 DGNKLDFATA RTEYYNMPAS APEVEISSIK NDLFRRDFTI NAMAIKINEK TFGLLLDFYG 601 GQRDIIDKKI RVLHNLSFID DPSRGLRAIR FAVRYNFEIG PHTNRLLKNA INLNLFDKIP 661 GNRLFLETKY ILSESNYLDA IKMMTNYGIM KFYIDKFKLD DLKLRIFENF ERYLIWHSVQ 721 CNTTVEPYFV RLLILFSDLK NNDFQKICDR FDLNRETKKR MMEGFGKSKH IANKIKKSSY 781 LKRSEIYYLF EGLKEEFILF TASILGDNYE ELIRDYITEI RWIKPEIDGN DLKKLGIPPS 841 QIYQKIFKQL TIFKLDGIIN SKDEELKKAI EIYEELKNAD EKNLH //