LOCUS ADR18811.1 1185 aa PRT BCT 08-JUN-2015 DEFINITION Calditerrivibrio nitroreducens DSM 19672 pyruvate ferredoxin/ flavodoxin oxidoreductase protein. ACCESSION CP002347-894 PROTEIN_ID ADR18811.1 SOURCE Calditerrivibrio nitroreducens DSM 19672 ORGANISM Calditerrivibrio nitroreducens DSM 19672 Bacteria; Deferribacteres; Deferribacterales; Calditerrivibrionaceae. REFERENCE 1 (bases 1 to 2157835) AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Land,M. TITLE Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011) PUBMED 21475587 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens DSM 19672 JOURNAL Unpublished REFERENCE 3 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4087656 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM 19672 collection_date :: Missing lat_lon :: 36.829513 138.217163 depth :: Missing alt_elev :: Missing country :: Japan environment :: Host num_replicons :: 2 ref_biomaterial :: DSM 19672, NBRC 101217 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 18599715 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04007 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Terrestrial hot spring; Japan, Nagano, Yumata Cell Shape :: Vibrio-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 7.0 - 7.5 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454 ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Calditerrivibrio nitroreducens DSM 19672" /mol_type="genomic DNA" /strain="DSM 19672" /isolation_source="terrestrial hot spring" /type_material="type strain of Calditerrivibrio nitroreducens" /db_xref="taxon:768670" /country="Japan: Nagano, Yumata" /lat_lon="36.829514 N 138.217163 E" protein /locus_tag="Calni_0900" /note="COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR011895: IPR002880: IPR019752: IPR019456: IPR 011766: IPR017900: IPR017896; KEGG: ddf:DEFDS_0568 pyruvate:ferredoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: Pyruvate-flavodoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric" /transl_table=11 BEGIN 1 MKKRFVQIDG NTAAAYVAHA TNEVIAIYPI TPSSVMGELA DEKSAKGEKN IWGSVPKVVE 61 MQSEGGAAGA VHGALASGAL TTTFTASQGL LLMIPNMYKI AGELTPTVFH VSARAVATHA 121 LSIFGDHSDV MACRQTGWAM LCSNNPQEVM DFALIAQAAT LESRVPFLHF FDGFRTSHEI 181 RTTEELSFDD MRAMLDDELI AAHKRRGLNP EHPVVKGTAQ NPDVFFQSRE ACNKYYEKVP 241 AITKKYMDKF FDITGRRYDL VEYFGDPQAE KVIVIMGSGA DVVKETVEYM NSNGAKVGVV 301 VIRLYRPFPL ESFINALPKT ALKIAVLDRT KEPGSLGEPM YLDVRTAIGE AMQKKMISYP 361 KYPTIVGGRY GLGSKDFTPA MVKAVFDNLD AAEPINGFSV GIEDDVTFKS LKYDKNWLVP 421 QDDVFNGMFY GLGSDGTVGA NKNSAKIIGD LTGNKVQAYF VYDSKKSGSM TISHVRFGNK 481 DIKSSYLIQK ADFIGCHKFT FLELYDILKP LKKGGVFLLN SPYGKDEVWD KLPVEVQKEL 541 IEKEARFYVI DADKIAEKIG LGNRTNTILQ TAFFKISNIL PFEKAVEAIK STIKKTYGRY 601 GDKVVNMNIA AVDAGINEVY EVNYPKTVTS SIKMHKYITD PTAPEIVKNA ISKMVAFEGD 661 DVPVSWLPDD GVFPTGTSKY EKRNIANFVP EWDPEICIQC GICSFVCPHA TIRMKIYEPD 721 VLKNVPSTFK SADARGKEFA GMKCTIQVAV EDCTGCGACV YNCPAKSKAD PTRKAINMVP 781 QVPLREKERE NFNFFLSIPE LDIKKYDKST LKGSQLAPHM FEFSGACAGC GETPYIKLLC 841 QLFGDRAIIA NATGCSSIYG GNLPTTPYTT RFDGRGPAWA NSLFEDNAEF GFGMRLAVDK 901 FNQMAIEYLN ALKDKIGAGL VDEILNASQS NQIEIEAQRE RVAKLREILK GIGTVEAKKL 961 DEIADYLVKK SVWIVGGDGW AYDIGYGGLD HVIAQSQNVN LLVLDTEVYS NTGGQASKAT 1021 TTGSFAKFAF AGKDGDKKDL GMMAMSYGNV YVAKVSLSNP AQCIKAFVEA EAYDGPSIII 1081 AYSHCIAHGI DMSKGVEQQK LAVQSGYWNL YRFNPMLAKE GKNPLIIDSK EPSITVEDYM 1141 KTETRFKTIM QTFPERAKEL ADFANRAAKR KYSIYKQLAE IKCNE //