LOCUS ADR18770.1 957 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 WD40 repeat,
subgroup protein.
ACCESSION CP002347-853
PROTEIN_ID ADR18770.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_0859"
/note="COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680:
IPR019781: IPR002372: IPR011600: IPR 019775: IPR019782:
IPR017986; KEGG: dma:DMR_25970 hypothetical protein; PFAM:
WD40 repeat, subgroup; Pyrrolo-quinoline quinone
repeat-containing protein; peptidase C14 caspase catalytic
subunit p20; SMART: WD-40 repeat-containing protein; SPTR:
Peptidase C14 caspase catalytic subunit p20; PFAM: Caspase
domain; WD domain, G-beta repeat"
/transl_table=11
BEGIN
1 MNLKGLTKFF LLFFIITIIN IFDCLASEPP SDPILRIETG MHTAVIRRIS IDKDERFLVT
61 GSDDKTIRIW ELRTGKPLKV LRPPVGEGNE GKIYAVAISP DGRHIAAGGR TGYEWDETDS
121 IYIFDRETGA LIKTIKGLPN VITHLSFSKD GKFLVAGLGD NGIRVYSTDG YSLIKEDKDY
181 GHSVYGFDFS SDGRLVVSSY DGYIRLYDRR FNLIKKIKAP GGKRPYHISF SPDGSKIVVG
241 YEDTPNVDII SANDLDVLYR ADTSEFSGCE FFSVTWSYDG RFLYAGGKCQ KQFDNKWKFI
301 IRRWDRAGKG SYTDIPVAES TIMHILPLKD NGIAFASYEP SFGIVDAVGR LAIFKGNEIA
361 DLRGQLEKFL LSYDGSIVGF GYEAFGGSPA VFDAENRELK TGEPSLRLLP PIFEMEGIKV
421 TDWKNNFNPK LNGKPIELKQ YEVSRSLAIS PDGKRFVLGA DWNLRCFDKD GNELWRVPAP
481 SVVWALNISG NGRVVVAGFG DGTIRWFRME DGKELLALFP HKDKRRWVLW TPKGYYDASP
541 NAEDLIGWHI NNGKENSADF YPAGRFRDRF YRPDIIAKLF TTYDEERAIA LANEESGRKR
601 VETSIKDILP PVITILSPSD GSSISKNELT VRYSLRNPSG EIVTAIKVLI DGRPVSQKRG
661 LLIKPKGEEA GVLTVTVPER DFELSLIAEN KYSASVPATI KLFWQGKKEE FIVKPKLYIL
721 AIGVSRYKDE SLRLQFASKD AEDFIKTMQT QKGRLYEDVV VKLLTDERAT KDEVLDGLDW
781 LQKETTSKDV AMIFIAGHGI NDTAGIYYFL PQNADLDKLK RTSVAFSDIK NTVSSVAGKV
841 VMFVDTCHAG NVMGKRAVPE ITGVINELTS AENGVVVFAS STGRQYSLED PAWGNGAFTK
901 AVVEGISGKA DLLGKGKITV NMLDAFIAER VKELTKGKQT PVTTKPVTVP DFPVAVR
//