LOCUS ADR18738.1 873 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 alanyl-tRNA synthetase
protein.
ACCESSION CP002347-821
PROTEIN_ID ADR18738.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_0827"
/EC_number="6.1.1.7"
/note="COGs: COG0013 Alanyl-tRNA synthetase; InterPro
IPR002318: IPR018164: IPR012947: IPR003156: IPR 018165;
KEGG: ddf:DEFDS_1463 alanyl-tRNA synthetase; PFAM:
Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl
tRNA synthetase SAD; phosphoesterase DHHA1; SPTR:
Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase;
PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase
second additional domain; tRNA synthetases class II (A);
TIGRFAM: alanine--tRNA ligase"
/transl_table=11
BEGIN
1 MISGKDIREK FLKYFEKHGH KIVDSSSLVP QNDPTLLFTN AGMNQFKDLF LGLEKREYTR
61 ATTCQKVVRA GGKHNDLENV GRTARHHTFF EMLGNFSFGD YFKKEAIEYA WEFLTKELGL
121 PEEKLFVSIY YDDEEAFEIW NKVIGIPAEK ILRRGEKDNF WSMGDTGPCG PCSEIHIDQG
181 PEAGCRKPDC NPDCDCDRHL ELWNLVFMQY DRSADGKLTP LPKPSIDTGM GLERITAVCQ
241 GKLSNYDTDL IKPIIEFTAK LAGKNYGNNE KDDVSLRVIA DHSRSTTFLI ADGVIPSNEG
301 RGYVLRRIMR RAMRHGKMLG FDGTFFYKVC EFVVDFMGDH YIELKDKKDY ISKMVAFEEK
361 RFSRTLDLGL KLIDELLEKN KDRKEISGSE IFKLYDTYGF PIDLLQDIAE DNGYKLDLMG
421 FDKEMALQQE RAKKHWVGSG EEKIAEVYKK LSHLKTEFQG YDNHSLSSKI LALIENGEEK
481 QEVQEGKEVD ILLEQTPFYP EGGGQQGDTG TIYSREAIAE VKDTKKYGNL IVHKAIVKKG
541 TLKVGENVTA EIDSVKRIAT ERNHTSTHLL HKALQMVLGD HVRQAGSLVN DEKLRFDFSH
601 FEAISKDDII EIERIVNSII IKNLSVTKTL MPIEEAVKSG AMALFGEKYD RIVRVVEVSD
661 FSKELCGGCH VRNTGEIGFF RIIGEMSVAA GVRRIEAVTG MKAFDEYVKM KNILDDIMLT
721 IKVSQDQIVS RVKDLLEENK AIKKDLDDQK SRELMKMMED LDRYTYDING VKLISIKISY
781 PDINKVRELA DNIKDKIKSG IVLIAAINND KLTILCGITR DLTDRFSADK IVKEITKITG
841 GGGGGRSDFA QAGGKDISKL DEALTKIKSF LGA
//