LOCUS ADR18711.1 806 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 PAS/PAC sensor
hybrid histidine kinase protein.
ACCESSION CP002347-794
PROTEIN_ID ADR18711.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_0800"
/note="COGs: COG4191 Signal transduction histidine kinase
regulating C4-dicarboxylate transport system; InterPro
IPR000014: IPR001610: IPR003594: IPR001789: IPR 013767:
IPR004358: IPR005467: IPR000700; KEGG: cts:Ctha_0490
PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding
region ATPase domain protein; PAS fold domain protein;
response regulator receiver; SMART: ATP-binding region
ATPase domain protein; PAC repeat-containing protein; PAS
domain containing protein; response regulator receiver;
SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS
sensor protein; PFAM: Response regulator receiver domain;
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase;
PAS fold; TIGRFAM: PAS domain S-box"
/transl_table=11
BEGIN
1 MEIVKNELEK LVNENIDFLV ENILDNFKDY EFAEYLPRNK ELVKNILLRI VPLINELIKK
61 SFDRINIEDI QNNDVLDFIK NEVLNHYTRG IALENFLNFL YIIYESLDAL FYEKYKNNLD
121 YCNSLSKFLR NCFFSIVKEI IKYWNELKYP QLNKAILKEN LSLISLKKTQ ELRETLLNSI
181 LTFLGGIFFI VDKELNVVFI SGEFSEKFGL SADKIKNLYD FHEKFHRCKS NFCPIIDGIK
241 RDVGHEFVEA FTLADGRESI FKVRMLKDIV VDGKIWKIIV MDDLSSNLER LDSILFSEIA
301 NAAELSIVLT DISGHIEYVN RFFEKTTGYT ASESIGQNPK ILKSGAHDEH FYKELWDNIL
361 SGKIWKGKFK NKRKDGSFYY EKAVIVPIKD VSGNILKFVA MKEDITKQVE LEMQVYISQR
421 YEYLNRLVGR FAHDLNNVLT YLYALNDEIE SSIDDNKIKE LIVGNKNALM KIADMIKSLS
481 SFSRRDHLEM EKTTVKDIYE DLMKINKRLI PTNIAILVDF SDASYVNVDK MLMQQVLYNI
541 IVNAKDAVLK KFGSAEGGRI GIVSEKIAID SSYKVKISEF ETLTVKVGSY ISIRVSDNGV
601 GIPKEHIYNI FEPFFTNNSN NQKVGLGLSA AYGIVKQHNG YIFVDSTEGI GTNVTIFLPE
661 YKEIIKDDKV EFKEENTKIY KLPPLTVMIV DDEPEILNYI EKVVSVAGGK VNKFDNYKSA
721 EEFLRSANEL DFIIVDYILK DGNGLRLFEK ARDKFLKLKT IVISGQADSN LKQHPEFNKG
781 FLFLRKPFKG STLINLMKFF LESYKI
//