LOCUS       ADR18664.1               648 aa    PRT              BCT 08-JUN-2015
DEFINITION  Calditerrivibrio nitroreducens DSM 19672 primosomal protein
            N' protein.
ACCESSION   CP002347-747
PROTEIN_ID  ADR18664.1
SOURCE      Calditerrivibrio nitroreducens DSM 19672
  ORGANISM  Calditerrivibrio nitroreducens DSM 19672
            Bacteria; Deferribacteres; Deferribacterales;
            Calditerrivibrionaceae.
REFERENCE   1  (bases 1 to 2157835)
  AUTHORS   Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
            Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
            Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
            Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
            Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
            Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
            Klenk,H.P. and Land,M.
  TITLE     Complete genome sequence of Calditerrivibrio nitroreducens type
            strain (Yu37-1)
  JOURNAL   Stand Genomic Sci 4 (1), 54-62 (2011)
   PUBMED   21475587
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2157835)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
            Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
            Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
            Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
            Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     The complete genome of chromosome of Calditerrivibrio nitroreducens
            DSM 19672
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 2157835)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
            Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
            Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
            Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
            Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4087656
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
                      David Bruce (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Finishing done by JGI-LANL
            Annotation by JGI-ORNL and JGI-PGF
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Calditerrivibrio nitroreducens Yu37-1, DSM
                                   19672
            collection_date     :: Missing
            lat_lon             :: 36.829513 138.217163
            depth               :: Missing
            alt_elev            :: Missing
            country             :: Japan
            environment         :: Host
            num_replicons       :: 2
            ref_biomaterial     :: DSM 19672, NBRC 101217
            biotic_relationship :: Free living
            trophic_level       :: Missing
            rel_to_oxygen       :: Anaerobe
            isol_growth_condt   :: 18599715
            sequencing_meth     :: WGS
            assembly            :: Newbler v. 2.3 (pre-release)
            finishing_strategy  :: Finished
            GOLD Stamp ID       :: Gi04007
            Type Strain         :: Yes
            Funding Program     :: DOE-GEBA 2009
            Gene Calling Method :: Prodigal 1.4, GenePRIMP
            Isolation Site      :: Terrestrial hot spring; Japan, Nagano,
                                   Yumata
            Cell Shape          :: Vibrio-shaped
            Motility            :: Motile
            Sporulation         :: Nonsporulating
            Temperature Range   :: Thermophile
            Temperature Optimum :: 55C
            pH                  :: 7.0 - 7.5
            Gram Staining       :: Gram-
            Diseases            :: None
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: Illumina, 454
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /organism="Calditerrivibrio nitroreducens DSM 19672"
                     /mol_type="genomic DNA"
                     /strain="DSM 19672"
                     /isolation_source="terrestrial hot spring"
                     /type_material="type strain of Calditerrivibrio
                     nitroreducens"
                     /db_xref="taxon:768670"
                     /country="Japan: Nagano, Yumata"
                     /lat_lon="36.829514 N 138.217163 E"
     protein         /locus_tag="Calni_0753"
                     /note="COGs: COG1198 Primosomal protein N' (replication
                     factor Y) - superfamily II helicase; InterPro IPR005259:
                     IPR014001: IPR001650: IPR011545: IPR 014021; KEGG:
                     ddf:DEFDS_1551 primosomal replication factor Y; PFAM:
                     DEAD/DEAH box helicase domain protein; helicase domain
                     protein; SMART: DEAD-like helicase; helicase domain
                     protein; SPTR: Primosomal replication factor Y; TIGRFAM:
                     primosomal protein N'; PFAM: Helicase conserved C-terminal
                     domain; DEAD/DEAH box helicase; TIGRFAM: primosomal
                     protein N'"
                     /transl_table=11
BEGIN
        1 MFYYKVAVAT PYLQFLTYKS INDIPDGTIV KVEVKKRTVL GIIYSKTTDF DPLDIKEILD
       61 IYDNIRLTNY YLTFLEKLSN YYTYPIGTTL HKISPIRFID LDIKKVKEPN LSYHTVSLND
      121 EQQSIYEEIA KKLDKFYTYL IYGVTGSGKT EIYCKLINDV LDRDGQVIYI LPEITLTTQL
      181 FHRLQIRLKK EVAVYHSKIT EKKRQDILVR FNSGALSVII GARSALFVPG KNIKLIIVDE
      241 EHDPSFKQED TPHYNARDMA VLYGKILNIP VVLGSATPSI ESYYNASTNK YKLLRLNQKF
      301 HPNTETSIDI IDMKNEEVID DFLSKKLYDG IYERLNRGEQ TLLLINKKGY SSYIICRYCG
      361 TILQCNNCSV SMTYYKSDKV ARCHYCGTYQ HKFRCGKCGG EDFFTVGTGS EKVFELMDQL
      421 FPGEILRLDQ DVVTSTRRVE SILSEFGEKR KKILVGTQII SKGLNYPDIT LIGVINIDNL
      481 FTLPDFRVEE RSVQMLTQFL GRGGRFEKPC QMIIQTYNPD NPVFNVVKTG QLDRFYNDII
      541 EKRKAMGYPP FVHLVKILID GQRIDKVMDI SNKISESLKH TLSKEDKLLG PAIAPISKIK
      601 NRHRMQIILK VKTVSNIAKY RKMVDDIFYK YKHGNTKFIF DVDPYNFM
//