LOCUS ADR18642.1 1563 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 NAD-glutamate
dehydrogenase protein.
ACCESSION CP002347-725
PROTEIN_ID ADR18642.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_0731"
/note="COGs: COG2902 NAD-specific glutamate dehydrogenase;
InterPro IPR007780; KEGG: ddf:DEFDS_1921 NAD-glutamate
dehydrogenase; PFAM: NAD-glutamate dehydrogenase; SPTR:
NAD-glutamate dehydrogenase; PFAM: Bacterial NAD-glutamate
dehydrogenase"
/transl_table=11
BEGIN
1 MLNISFLTHN DLTEDFSRNN KVSLIESLFP EKVKREDNFF NFSRIMINKL PDNLISHLNG
61 EDLRNFLLEL YKNLQDRKKK RYYINSFNGI TDKFIIGNFS ILTLITDDRP FLVDSLREYF
121 YEINLNQQFI IHPILSIKRN NKGEVIDIGE PYIGSSNESF VVIFISNISN EELEKIKAEV
181 EDIYENVLIV VDDYPKMLGF LKQLEQRYQG LSTETSDFIS WLISDKFIIQ GVRIISNIKS
241 DNEFSLDQMG VYKFNRTTKL IPSIIKAVKN NKILTLDNYP IVVDKAIYKS KVKKRKNYDR
301 IILITGEKDN LSIISIIGVF TKDALKSSPF EISIIKNKIK KVVEHFNFVN GSHDHKWLID
361 IIESFPKIEI FNFDEKTIIE IMKTIFSIQG KNQIRLYYKT FSPQKNLYIF LAIPYEKYSS
421 ELVNDLKESF EKLFTAKTLD ISVRHDEHGY NFIHFNLYAK ELITKVDENK LKSVISELIK
481 GWEEEFYNIL SEELPGYEAD KVYDTNVNLF PENYKVKCSP YEAVFDINNL KKLSTGNVYS
541 SLYIENNKLI IKIYKKQRML LTDIMPIVDN IGLKVNEEDI FEIKSEEHTC SYIHSIYLDC
601 IEDAKQFYEN FKQSLPELVE NVILDNVEND RLNKLIITSQ LNYREVDLLR SIRNYLEQIN
661 SNFKRNTIDD ALLNNPEISK LFIEYFSEKF NPSIQKRFTE KIADEITTKI ESVKSVVEDR
721 ILRCFMDILK NMIRTNFFIN PTKNYISFKI SSKTLNILPD PKPLYEIYVH SSNMEGIHLR
781 GGKVARGGLR FSDRHDDFRT EILGLMKTQM VKNTVIVPVG SKGGFIVKKR FDDSNLDKIH
841 VIEQYKTLIR GLLDITDNYV GKKVVHPQNV VIYDENDPYL VVAADKGTAT FSDIANSVSI
901 DYGFWLGDAF ASGGSAGYDH KKVGITAKGA WESVKRHFRE MGKDIQREPF TVIGIGDMSG
961 DVFGNGMLLS KQIKLIAAFN HMHIFIDPDP DPATSFNERL RLFKLPKSAW SDYNQNLISK
1021 GGGIFERSAK KIELSPEMKA MFKTDKNFAT GEELIKMILK CNAELLWNGG IGTYVKDSSE
1081 SNAEVGDKLN DNVRINAEEL QVKVIGEGGN LGFTQKGRIK FALLGGKINT DAVDNSAGVD
1141 MSDHEVNLKI LLSHLMKTKE IKDLKERNRL ISDLTDEVAD LVLKDNFEQS RILSIEAINA
1201 ENNILPYIEA ANYLKNIGLL NFEIEKIEFI KENRGITRPE LAVLMAYTKL FLFDQILEDV
1261 DINEPILKKL YESYYPKTLL EKYGHSIYEH KLIKEILATV MVNKFVNQFG FVNYLNLHNL
1321 YGKDFYKIML RYFQAEELFN LSELRNRLDQ LDAKKSTSTT YTAFIEIEKT LAVATEWMLN
1381 DTNFEMLQNN KDLFIKMLQK IGDTPGGDFK KIFRAFEQDL ISKGLPSNLA YEVSRIKFSK
1441 PVFDLFEVVV KESLDIELLI KNYYQMSEVL NFKIITNRIK DLKPKDHWDN VNKDNLLKKI
1501 KILQKKFAHK VTLESEWYKN IVKKEKLFFS NYFNFVKSLE EGDSYSLIPY NVILESLDKI
1561 VQI
//