LOCUS ADR18578.1 655 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 Excinuclease
ABC subunit B protein.
ACCESSION CP002347-661
PROTEIN_ID ADR18578.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_0667"
/note="COGs: COG0556 Helicase subunit of the DNA excision
repair complex; InterPro IPR004807: IPR014001: IPR001650:
IPR006935: IPR 001943: IPR014021; KEGG: ddf:DEFDS_0663
excinuclease ABC subunit B; PFAM: helicase domain protein;
type III restriction protein res subunit; UvrB/UvrC
protein; SMART: DEAD-like helicase; helicase domain
protein; SPTR: UvrABC system protein B; TIGRFAM:
excinuclease ABC, B subunit; manually curated; PFAM:
Helicase conserved C-terminal domain; UvrB/uvrC motif;
Type III restriction enzyme, res subunit; Ultra-violet
resistance protein B; TIGRFAM: excinuclease ABC, B
subunit"
/transl_table=11
BEGIN
1 MKFKLVSNYT PQGDQPEAIR QIVENFRSGI DRQVLLGVTG SGKTFTMANV IQELNVPTLI
61 IAHNKTLAAQ LYGEFKEFFP DNAVEYFVSY YDYYQPEAYI PQTDTYIEKD SSINDDIDKM
121 RHSATRSLLE RRDVIIIASV SCIYGLGSPE AYYGMLVSVE VGEERVIDEI LAKLVEIKYE
181 RNEIDFHRGT FRVKGDVIEV FPSHESDLAY RIEFFGDEID RISEFDPITG KTLYTRNKVA
241 IYPNTHYVTT KVTIEQAIKE IERDLKNSVV KFEQQQKLLE AQRLQQRVMF DLEMIKETGY
301 CTGIENYSRY FDGRLPGTPP PTLMSYLPKD ALVIIDESHI TVPQIRGMYN GDRSRKMTLV
361 EYGFRLPAAL DNRPLKFEEF NQIAKKILYV SATPSEYELE DSKGVVVEQI IRPTGLMDPE
421 VEIRPAKNQV DDLIGEAYKV ISRGERVLVT TLTKRMAEDL TRYMKDLGFS VEYLHSDIDT
481 LDRVKILRDL RLGKIDILIG INLLREGLDL PEVSLVAVLN ADKEGFLRSE RSLIQTIGRA
541 ARNVNGKAIF YADRITESIK KAVEETARRR KKQLQYNQEH GITPETIKSE IKNILESIYE
601 KDYFEYDIEE FGIKSDGNIE KQIAELEKEM YKAAESLNFE KAARIRDIIL EYKAR
//