LOCUS ADR18418.1 909 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 cyclic nucleotide-
binding protein protein.
ACCESSION CP002347-501
PROTEIN_ID ADR18418.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_0505"
/note="COGs: COG1033 exporter of the RND superfamily
protein; InterPro IPR000595: IPR000731: IPR018488:
IPR003392: IPR 002373; KEGG: dal:Dalk_4262 cyclic
nucleotide-binding protein; PFAM: cyclic
nucleotide-binding; Patched family protein; SMART: cyclic
nucleotide-binding; SPTR: Cyclic nucleotide-binding
protein; PFAM: MMPL family; Cyclic nucleotide-binding
domain"
/transl_table=11
BEGIN
1 MKKLLIFAKN NYIAVLIVIF IITLSFASQI PKVVIDPSSD GFMIKGDPEK TYYEKIIKEF
61 GSDNRMIIFL KDRNLFSEDK IKAISEVLEK LEKYKYISKI ETVYNQKNIK WRDGGLITED
121 FLDPFNLPSK EEILQAKRDA IENPILNSNL INKDGTAMAI NIIIEKHPEI KSYDTLVSKE
181 IESFLKPLNG VIEEYFQIGG PYFKKSLVEY IIKDQIKLVP LAVLVLFIVV IISLRSFYGA
241 LSPLVTAGLS VIWTFGFMGL IGIPINIITV IIPALIIVIG STEDIHMISE YFEGLEHKQD
301 RHFAIEFMAN KMGIAIFLTA FTTIAGFSSI ITNDITVLKQ FGIVTTFGLI ANFIITVFYT
361 PAMLRLRGPL KAPTHSDRSD SNIFQKIANL GLKIVYFNRG FVFGVVVVIT VAIGFGMNFL
421 RINNDTISYF KKTSEIRLRA DIVKEHLAGA QNFYIVVDAG KPGAFKNPHY LKEIYKIVNH
481 LNETKYFSKS IGISDFIALV NQEMNEGNKK FYVIPESKEL IAQYYLLFHR KDIENNVNAD
541 FSKANIIVKH NLTSSYELKN AIQEVQNYIK NNIDSSLKIK FTGENVLVNS AADTIAIGQA
601 WSITLVLFII FFIMSILFLN IKAGLLSLIP NIIPIFFAFG TMGYFGIDLN VGTAMIAAIS
661 IGIAVDDTIH LMVRYNSELK RMNDQDLAIQ ETIHSEVRAV VSTSIALTLG FSVLVLSNFL
721 PVIHFGWLSA MVMVIALFAD LIITPLLLSK TRLITLWDML NIKLKQSVFN SVLFEGMKKW
781 QIKKLVLSSK MKEFKEGEYI IKQGDKERTF YLLLDGKADV FRNTENGESI KITTFEDGQF
841 FGEIALCGDI ERTANVVAKT NCLTLEFDWE SLERIRKFLP NITAKFFMNL SKVMSIRLKE
901 TTEKITKGV
//