LOCUS ADR18327.1 1706 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 LamG domain protein
jellyroll fold domain protein protein.
ACCESSION CP002347-410
PROTEIN_ID ADR18327.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_0414"
/note="InterPro IPR006626: IPR006558; KEGG: ddf:DEFDS_1152
hypothetical protein; SMART: LamG domain protein jellyroll
fold domain protein; Parallel beta-helix repeat; SPTR:
Putative uncharacterized protein"
/transl_table=11
BEGIN
1 MFIKNFKVTK NHIFYLSLFF VLFFPFHSFA ANLYVGDCYR GPGYTTIQNA INAASNGDTI
61 YVCDGTYNEN LSISNKSLSI IGYSNDPSRV IVQNFNNGYT ININPSYNSI TFSNITFKNT
121 SSNNVINFSN KPGHVTITNS RIEGNGSDTL YFDKGIGSLS ISNTSISNKS SRGIQINGSS
181 DNEILIDNVS IDAKNTAFWV TGTINNGFTI KNSSIKSQDS AGIYFNTVNG IFYIDNVTVK
241 SYQSSILVRN VINNGFTLKN SNLFSTTDKA IYFLKPVSND INVDSNKLEG DLGFWIDGNV
301 NNDLIITNTS IKANRDVALK ITNTANGSIK ISNSNIIATS NHAVQLYTIK NNLEILNTKI
361 ESGSGNKGLE VNDINGFLKI ENSEIYAGAS ALIINKTISG NATIKSSNII SDTSKGAIFS
421 GDIWGGLNID NSSFIAYSTA LDLQSAKSFK PVITYSYFES KVDTAVDAKL SQWTSFNAQN
481 NCFKTSGNNN NDVGLNLQIT NSTNVNINNN CFYAPSITQL ANSNREGYNW RSNYWDKFTG
541 NIYNYNKIKD DSPLMTCPNI CLARAIPKPI ADFHFDECSW DNDNSTFEVK DSSGNLINGS
601 SVNGANTESS DTSGGGINRV GKFDGSKKTT IQIPANQKLQ IGGSLTYMAW IKHDPANKSL
661 SNIFTNGGWG NALRIQNNNK ALFELQINGD QQLYSNKSID DFNWHHIAGV YDSNKNEMRI
721 YIDGVLDNSM SVNGTLTVYT GNNYIGSENG IAYYYTGYID EVKIFNNALD SKVISAIYNY
781 EKSGKNWDGT DRVKVNCLQL NQCFFDDFNR NSLGSKWTII KNENFTPIIE DNKLVLTKKI
841 DNVASGVTLA GKFPSQDNYI EIEFEHNAYG NNGNGADGVT IALADAAVVD RLLSDNISDI
901 AGAYGGSLGY AQRSGLHGFK GGWLGIGIDE YGNFANDYEG RGKNCTTHPP QDKVKDSITI
961 RGRGDNDTGY CFIANSGQLN PGVDNSTAKN YKYKISIDTR NNKTFIKVDR DILDGNGYQT
1021 IINWYDATQN ATPPDNFKLS ITGSTGSVTN IHSIDDLKIS ALSCGDLGQE IGYKYLRIDA
1081 PPTALTCQPA DVTITACIND DCSQKYSSGV SGIQLSATNG ANWTTNPVSI PNGSYSVNTG
1141 LYKQTPGQTT LSITSANPLP SNTPIYKCSW DPNCVVTFYD SGFVFDIPDN YSCKPQNDIT
1201 IKAVRKDDTT HKCTPAFQNK DIPIYFSFNY ITPSSNSNNT KPKVNGIQLN STVNLTFDNN
1261 GQSTFDFTYE DAGQISVTAS YDNGSVKAVG SDSATLKPFG FYVYTATSNW EAENGANSTV
1321 FKKAGEEFNL SAKAVCWESD TDTDLSNNRL TQNYQKNNAT VSHTLVSPGG GNNGTISVTS
1381 LNFTNGVASV DNQKFSEVGI IKFTVTDNDY LGTGPITGTS ANIGRFIPDH FELTESFIEK
1441 YTSDFVYMGN PFELKYTIQA KNTDNNTTLN YTGEFAKGII DLFAENNYDG NNLINRFTPA
1501 LSSSWGNGSY SFFDNVTFTK DPANLKSLEN FRLGINVTDP DGPILINRDM KPGAASCTSD
1561 CQYKTIDNST RILNAILDIQ NAYGPANYPL NVPAYILYYD KNGKLTINAA DNKTTFTISN
1621 ITLSNWTQNL NQGDTDVVDL IKKSNGYFEI KLKAPGTNKN GSVTLNLSGL DFLKDTVLNN
1681 LTQGIATFGI FGNQQKRLYW KEVPAK
//