LOCUS ADR18082.1 834 aa PRT BCT 08-JUN-2015
DEFINITION Calditerrivibrio nitroreducens DSM 19672 multi-sensor
hybrid histidine kinase protein.
ACCESSION CP002347-165
PROTEIN_ID ADR18082.1
SOURCE Calditerrivibrio nitroreducens DSM 19672
ORGANISM Calditerrivibrio nitroreducens DSM 19672
Bacteria; Deferribacteres; Deferribacterales;
Calditerrivibrionaceae.
REFERENCE 1 (bases 1 to 2157835)
AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S.,
Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L.,
Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C.,
Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C.,
Klenk,H.P. and Land,M.
TITLE Complete genome sequence of Calditerrivibrio nitroreducens type
strain (Yu37-1)
JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011)
PUBMED 21475587
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens
DSM 19672
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2157835)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4087656
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM
19672
collection_date :: Missing
lat_lon :: 36.829513 138.217163
depth :: Missing
alt_elev :: Missing
country :: Japan
environment :: Host
num_replicons :: 2
ref_biomaterial :: DSM 19672, NBRC 101217
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Anaerobe
isol_growth_condt :: 18599715
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04007
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Terrestrial hot spring; Japan, Nagano,
Yumata
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55C
pH :: 7.0 - 7.5
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: Illumina, 454
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Calditerrivibrio nitroreducens DSM 19672"
/mol_type="genomic DNA"
/strain="DSM 19672"
/isolation_source="terrestrial hot spring"
/type_material="type strain of Calditerrivibrio
nitroreducens"
/db_xref="taxon:768670"
/country="Japan: Nagano, Yumata"
/lat_lon="36.829514 N 138.217163 E"
protein /locus_tag="Calni_0169"
/note="COGs: COG0642 Signal transduction histidine kinase;
InterPro IPR004358: IPR005467: IPR001789: IPR000700: IPR
000014: IPR001638: IPR013656: IPR003661: IPR003594:
IPR001610; KEGG: dba:Dbac_2309 PAS/PAC sensor hybrid
histidine kinase; PFAM: extracellular solute-binding
protein family 3; PAS fold-4 domain protein; histidine
kinase A domain protein; ATP-binding region ATPase domain
protein; response regulator receiver; SMART: extracellular
solute-binding protein family 3; PAC repeat-containing
protein; histidine kinase A domain protein; ATP-binding
region ATPase domain protein; response regulator receiver;
SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS
sensor protein; PFAM: Histidine kinase-, DNA gyrase B-,
and HSP90-like ATPase; Response regulator receiver domain;
His Kinase A (phosphoacceptor) domain; PAS fold; Bacterial
extracellular solute-binding proteins, family 3; TIGRFAM:
PAS domain S-box"
/transl_table=11
BEGIN
1 MMGNMRKIII LIGVSLLILF SCYIVFDDSS LTREEKEYLK HKKEIVFVSQ INYPPFEFLS
61 DRLESSGMMV ELARLMSTEF GFESRFINTT FARAQQMILN GEADVLTSFF FSEERNKKFN
121 FTKVVFEIPA SIFVKQDNDD IKKLSDLHGK RVAIQKGDYA IDFIKSKGIR IDLIETDDFI
181 MATNKLIKGE VEAVIGDDQI IFYYLSRNNL VSELKVVGEP LYIGENCMAT RKSEKILVSI
241 LNKGINLAKK KGYLDSINRK WIGERVTFAK YMKKFFGLML IPLSILLLIV FVFWIWNLNL
301 RKRVEERTKQ LSEKNKELAL NNSKLNAILS ASPDGIGVMN MNMELVFISD KLAKMYKIEP
361 EKKFEYLNKN ITDFVDESYR DKMMKNISDI FEGKKYWNLS EYLVRDAYGE QFWVEVSSSL
421 LYDDAQKPYG ILFVERDCTE RKRIEQQLLD YNEKLKENNR ALNELKTKEE EANIAKSNFL
481 AIISHELRTP LNGVLGLLEL IHKDPERFNE FFPVILSSGE QLRVLINDIS DLTKVEQGKL
541 ELVEKRFSIS NFINEIVSYA KIKIQDSNLE LVVDIEQFEG YLEGDAVRLR QVVYNLINNA
601 IKYTDNGFVK VVIRKLFEND KIMRIYFEVT DTGIGISPND IDNIFKPFKR LDGSYTKKRY
661 GSGIGLYISK AILNMMNSNI NVESEVGKGS KFYFKLDLKR SIPDSEIKEE ISDEIFNLKA
721 LVVDDNKINL FVAENMLAKL GVAVDFAENG MVAIEKVSNN HYDFIMMDLQ MPEMDGLEAT
781 RRILDMGKDV KIFAMTANVY KDDIQKALNA GMVDFCPKPF TLSFLKSLLS RHFK
//